Vibrio neocaledonicus: D3H41_11890
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Entry
D3H41_11890 CDS
T06228
Name
(GenBank) LysR family transcriptional regulator
KO
K10918
LysR family transcriptional regulator, transcriptional activator AphB
Organism
vnl
Vibrio neocaledonicus
Pathway
vnl05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vnl00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
D3H41_11890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vnl03000
]
D3H41_11890
Transcription factors [BR:
vnl03000
]
Prokaryotic type
Helix-turn-helix
LysR family
D3H41_11890
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Gene cluster
GFIT
Motif
Pfam:
LysR_substrate
HTH_1
HTH_30
Motif
Other DBs
NCBI-ProteinID:
QCO86728
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Position
1:2394113..2394988
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AA seq
291 aa
AA seq
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MKLDDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDSVNLRLLNRHARKLSLTEA
GERFYHECSPLLQRLTTAAEEITDDCRGASGKIKISAPYNLTKRMMMPMFNSFMKQYPDI
NIELTTENNADKLDPTEWDVIFRVGPQRDSSLIARKIGEVKDILVASPDYLTSNPAPHHA
EELSNHSLLKGYPLIKWTLINSKGESVVNVDRGRFQANALNVVRSACSEGLGITLMPDVM
IKEYIESGDLVRVLPDWSANPRDIYMLYNHKDHLPEKVRLFIDFVIAYNIH
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atgaaattagatgacttaaacctgtttcgactggttgtcgaaaatgggagctacaccgca
acttcgcgaaaaaccatgatcccggttgcgaccatcacccgacgcattcaagcgctagaa
gactctgtcaatcttcgactattgaaccgtcatgctcgcaaactctcgctcactgaagca
ggggaacgtttttaccatgagtgctctcctttactacaaaggctaacaaccgcagcagag
gaaatcactgacgactgccgaggagcatccggcaagattaagatatccgcgccttacaac
ttaactaaacgaatgatgatgccgatgttcaacagctttatgaagcagtacccggacatc
aacattgagctaacgacagagaataatgcggacaagcttgaccctactgaatgggatgta
atttttcgagtgggacctcaacgcgactctagcctcatcgcgcgtaagattggcgaagtg
aaggatattctcgttgcaagccctgactatctaacctcgaatcctgcgccacatcatgca
gaagagctctctaaccattcattgctaaaagggtacccgcttattaagtggaccttgatt
aatagcaaaggcgagtctgtggtgaatgttgaccgtggtcgttttcaagcaaacgcgctc
aatgtggtgcgcagcgcttgttccgaaggtttaggcatcacactaatgccagatgtcatg
atcaaagagtacatcgagagcggcgatttggtacgcgtactgccagattggagtgcaaac
ccgcgcgacatttatatgctttacaaccacaaagatcacctgccagagaaagttcgcctc
tttattgactttgtgatcgcttataacattcactaa
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