Vibrio neocaledonicus: D3H41_12145
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Entry
D3H41_12145 CDS
T06228
Name
(GenBank) RNA polymerase sigma factor FliA
KO
K02405
RNA polymerase sigma factor FliA
Organism
vnl
Vibrio neocaledonicus
Pathway
vnl02020
Two-component system
vnl02040
Flagellar assembly
vnl05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vnl00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
D3H41_12145
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
D3H41_12145
09142 Cell motility
02040 Flagellar assembly
D3H41_12145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vnl03021
]
D3H41_12145
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
vnl02035
]
D3H41_12145
Transcription machinery [BR:
vnl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
D3H41_12145
Bacterial motility proteins [BR:
vnl02035
]
Flagellar system
Flagellar assembly proteins
Stator
D3H41_12145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
HTH_23
UPF0122
HTH_10
GerE
MarR_2
Rv2175c_wHTH
Phage_terminase
MarR
UPF0175
PhyR_sigma-like
KORA
Motif
Other DBs
NCBI-ProteinID:
QCO86776
LinkDB
All DBs
Position
1:complement(2445812..2446546)
Genome browser
AA seq
244 aa
AA seq
DB search
MNKAITYDQHGKFNSQQAFIERYSVLVKRIAHHLLGRLPPSVQVEDLIQAGMIGLIEAQQ
NYDGSKGASFETYAGIRIRGAMLDDMRKGDWVPRSVHKNNREINQAIAELEGELNRDPTD
SEVATHLGMTLDQYHSALTDINCSKLVGIEDLGVSDDVISPADETDDSNPFKGVVDESFR
KALVESIKQLPEREALVLSLYYDEELNLKEIGDVLGVSESRVSQILSQAMQRLRTKLSAW
TQND
NT seq
735 nt
NT seq
+upstream
nt +downstream
nt
gtgaataaagcgataacctatgaccaacatggcaaatttaatagccagcaggcgttcatt
gaacgttattcagtgttggttaagcgcattgctcaccacctactaggccgtttaccgccg
agtgttcaggtagaggatttaattcaggccggcatgatcggtcttatcgaagctcagcag
aattatgatggttctaaaggtgcgagctttgaaacttatgcaggtatccgtattcgtggc
gcaatgttagatgacatgcgtaaaggcgattgggtaccgcgttctgttcataaaaataat
cgagagattaaccaagcgattgcggagctggaaggcgaattaaatcgagatcctactgat
tctgaagtagccacgcatctcggtatgacactggatcaatatcatagtgctcttaccgat
atcaactgctcaaaattagtcggtattgaagatttaggcgtttctgatgatgtgatttca
cccgcggatgaaaccgatgacagcaacccattcaaaggggtagttgatgaatcatttcga
aaagcactggttgaatcaataaaacagcttccagagcgtgaagctttggttctttcgctt
tattatgatgaagaactcaatttgaaagaaattggcgatgtgttaggcgtaagcgaatct
cgcgtaagtcaaatactgagtcaagcgatgcaacgtttacgtaccaagctcagtgcgtgg
acacaaaatgactaa
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integrated database retrieval system
