Vibrio neocaledonicus: D3H41_12930
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Entry
D3H41_12930 CDS
T06228
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
vnl
Vibrio neocaledonicus
Pathway
vnl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vnl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
D3H41_12930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vnl03400
]
D3H41_12930
Enzymes [BR:
vnl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
D3H41_12930
DNA repair and recombination proteins [BR:
vnl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
D3H41_12930
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
QCO86920
LinkDB
All DBs
Position
1:complement(2599839..2603330)
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AA seq
1163 aa
AA seq
DB search
MFTVYHSNQVDVLKSLLVELIRISPLENPFEKEQILVQSPGMSQWLKMELAKEFGVAANI
DFPLPATFIWEMFTQVLPEVPKRSAFNKEAMTWKLMHLLPGLLNQDVFSPLAQYLKDDSD
HSKLYQLAEKIADIFDGYLVYRPEWIASWEAGQSVPELEDEHPWQPILWQALYDHTVSLG
QSPYHRANLYEHFIDTLESFNGNFDHLPKRLFVFGISSLPPRYMDALKAIGEHIDVHLMF
TNPCRYYWGEVRDRKYLARLAAKHRQHVVWQDDHSEVQGETEQLKGSLEDNVIDELHTDV
VGNSLLASMGKLGRDNMYLLSQLESHEIEAFVDVERDSLLHQLQADILNLEEHQDDQQIE
NSHHKQVVSLGDKSLSLHACHSPMREVEVLHDQLLAMFDADPTLKPRDIIVMVADINAYS
PAIQAVFGNAPGERFIPYSISDRTADQESPILAAFMQLVNLPNTRCLASELLELLETPAI
LKRFELSEDDFLQAKQWVEESGIRWGLDANTGREFELPETRQNTWQFGIQRMLLGYAMPE
SAGLFETEQGSLSPYNEVQGMGAELAGKLAHFIQQISTYRSKLSHVQTIDGWRETLVSLL
DDFFSVELEGEMALKSIRDTLSQLKEQLADAAFDDALSPSIISQYLQNKLSGTRVSQRFL
AGQVNFCTLMPMRSIPFRTVCLLGMNDGVYPRSMPPEGFDLMTGRTKPGDRSRRDDDRYL
FLEAMLSAQQTLYISYVGRSIQDNTERVPSVLVSELMEYCHQNYCLSGDEALPVDESGDN
LLNALVNTHAMVPFSPRAFQGMHASYAKEWIPAALTQSSQSQGYVRRDFNRALDDYLLGA
TFPLELDLVELQRFWRLPVQYFFNRRLKVIFEPPLPVMEDDEPFVLGGLESYQMRDELLE
TLLETTLMQPEKKTEVLKHFMSQQRAQGKLPVGAFGDIEFETNRVKAEELVDKLAFLSGA
PQDDLEIDLTFDSLFERNEGEEKNVRLTGWLTQCYQSGLIRYRSGKIRSQDYLAAWIDHL
AMSASGHAKKTHIIGYDRKEGALHLIYPEIADAQYAKQLLTELVRLFFEGMTKPLPYFPK
TALACVEAGFSRGQWVDDEEKSLKKMADAFNDGFMSPGEGNNAYISRIWPAWNDELASEV
RLLTALVLQGARLAVQDADDVKA
NT seq
3492 nt
NT seq
+upstream
nt +downstream
nt
ttgtttactgtttatcactccaaccaagttgacgttcttaaatcactccttgtcgaactg
attcgaatcagtccgctggaaaacccgttcgaaaaagaacaaattctggttcaaagtccg
ggcatgtcccagtggctaaaaatggaattggccaaagagtttggtgttgccgcgaacatt
gattttccgcttcctgctaccttcatttgggaaatgtttacgcaggtgttgccagaagtg
ccaaaacgcagtgcgtttaacaaagaagcgatgacttggaagttgatgcatctgctgccg
gggcttctcaaccaagacgtgttttcgccgttagcgcagtacctcaaagatgacagtgat
cactctaagctgtatcaactggctgagaaaattgccgatattttcgatggttacttggtg
tatcgtccggagtggatcgcaagttgggaagcagggcagagtgtgccagagctggaagat
gagcatccgtggcagccgatcttatggcaagcgttgtatgatcacactgtgtcattagga
cagtctccatatcaccgtgccaacctttatgagcactttatcgacacgttagagagtttt
aacggcaattttgaccatttacccaagcgtttgtttgtttttggcatttcttcgttgccg
cctcgctatatggatgcgctaaaagcaattggtgaacacatcgacgtgcatctgatgttc
accaacccgtgtcgttattactggggtgaagttcgagatcgcaaatatctggctcgtttg
gcggcgaaacatcgtcagcacgttgtgtggcaggacgatcactcggaagtgcaaggtgaa
actgagcaactgaaaggatcactggaagataatgtgatcgatgagctgcacaccgatgtg
gtcggaaacagtctgttggcatccatgggtaaactcgggcgcgacaatatgtatctgttg
tctcagctggaatctcatgaaatcgaagcctttgttgatgttgagcgcgacagtctgctc
catcaattgcaagcggatattctcaatcttgaagaacatcaagatgatcaacagattgaa
aacagtcatcacaaacaagtggttagcttgggtgataaatcactgagcctacacgcttgt
cacagcccgatgcgcgaagtggaagtgctgcatgatcaactgttggcgatgttcgatgct
gacccaacgttaaaaccgcgcgatattatcgtgatggtcgcggacatcaacgcttacagc
cctgcgattcaggcggtctttggtaacgcgccgggtgagcgttttattccatattcgatt
tctgaccgaaccgccgatcaagagagcccaattctggctgcatttatgcagttggtgaac
ttacccaatacgcgctgtttggcatcagaactactcgaacttctggaaactccagcgata
ttaaagcgttttgaactcagcgaagatgatttcttacaagccaaacaatgggttgaggaa
tcgggaattcgctgggggttggatgccaataccggacgcgaatttgaactgccggaaact
cgtcaaaacacatggcaatttggtattcaacgaatgttgcttggctacgcgatgccagaa
tccgctggtttgtttgaaaccgagcaaggcagtttgtctccgtacaacgaagtgcaaggc
atgggcgcagagctggcgggcaagttggcacactttatccaacaaattagcacttatcga
agcaaactttctcatgttcaaactatcgatggttggcgagagactttggtttcactgctg
gatgacttcttctctgttgagttagaaggcgaaatggcgctcaaatccattcgcgatacg
ctcagccaactcaaagagcaattagctgatgccgcatttgatgatgcgttatcgccgtcg
atcatcagccaataccttcaaaacaaattatctggcacacgagtcagccagcgcttcctt
gctggtcaagtgaacttttgtactctgatgccgatgcgctctattccgtttagaaccgtt
tgtctactggggatgaatgacggcgtgtacccacgctccatgccgccagaaggctttgac
ttgatgacgggaagaaccaagccgggcgaccgttcgcgccgagatgatgaccgttaccta
ttcctcgaagcgatgttgtctgcacagcaaacgctctacatcagttatgttggccgttca
atccaagacaacaccgagcgagtgccttcggttctggtttctgagctgatggaatactgt
catcaaaactattgtttaagtggtgatgaagcgttgcccgttgatgagtctggcgataac
ttattaaatgcgttggtgaatacccacgccatggtgccgtttagcccaagggcgttccaa
ggcatgcacgccagctacgcgaaagagtggattccagcggcattgactcaaagtagtcaa
tcgcaaggctatgttcgtcgtgattttaatcgggcattagacgactatctgttaggagcg
acgttcccacttgagctcgacttagtagagttgcaacgtttctggcgcttacctgtgcag
tattttttcaatcgtcgtttaaaagtaatctttgaaccgccgctaccggtgatggaagac
gacgaaccctttgttttaggtggtttggaaagctatcaaatgcgtgatgagctgttagaa
accttgcttgaaacgacattgatgcagccagagaaaaaaacagaggtgcttaaacacttt
atgagtcaacagcgcgcgcaaggcaaactgccggtgggggcgtttggtgatatcgagttt
gaaaccaaccgagttaaggcggaagagctggtggataaactggcgtttttatctggtgcg
cctcaagacgatttggaaatcgacctgacgtttgattccttatttgagcgaaatgaaggc
gaagagaaaaacgttcgcctaacaggttggctaactcaatgctaccaatccggtttgatt
cgttaccgaagcggtaagattcgctcgcaggattaccttgctgcgtggatcgatcacctt
gccatgtcggcgtcgggtcatgctaagaaaacccacatcattggttacgatcgtaaagaa
ggcgcgctgcatttgatctacccagaaattgccgatgctcagtatgccaaacagctactg
actgaattagttcgcttattcttcgaaggcatgactaagcctttgccttatttcccgaaa
acggcgttggcttgtgttgaagcgggctttagtcgcggtcagtgggtagatgacgaagag
aaatctttgaagaaaatggctgacgcattcaatgatggcttcatgagcccgggcgaaggc
aataatgcatacatctctcgaatttggcctgcttggaatgatgagttggcctcagaagtt
cgtttgctgacagcattagttttgcaaggtgcgcgcttagcggttcaagacgctgatgac
gtaaaagcgtaa
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