Vibrio neocaledonicus: D3H41_13520
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Entry
D3H41_13520 CDS
T06228
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
vnl
Vibrio neocaledonicus
Pathway
vnl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vnl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D3H41_13520 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vnl03019
]
D3H41_13520 (pcnB)
Enzymes [BR:
vnl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
D3H41_13520 (pcnB)
Messenger RNA biogenesis [BR:
vnl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
D3H41_13520 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol
PolyA_pol_arg_C
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
QCO87033
LinkDB
All DBs
Position
1:2742195..2743556
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AA seq
453 aa
AA seq
DB search
MNTNDYTPSEPATIPELALNVITREEHNISRKQISDNALKVLYRLNGAGFDAFLVGGGVR
DLLLGQKPKDFDIATNATPEQIKQLFRNCRLIGRRFRLAHIMFGRDIIEVATFRGHHQEQ
KNKSISQQSKEGMLLRDNVYGTIDEDAERRDFTINSMYYNIADYSIHDYARGIEDLEDRL
IRLIGDPETRYREDPVRMLRAVRFAVKLDFDIEEDTAAPIEHMAPLLGDIPSARLFEESL
KLLQSGHGLETYHLLREYNLFQQLFPTIAAHFTEDYSSHTEQMLDLVLDSTDMRIEDGKR
INPAFMFAAMLWYPLCAKADELMEERNLGHYDAIMEASNIILDEQVRTIAIPRRHTATIR
EIWQLQLRLPRRNGKRAFRLMELNKFRAGFDFLEMRGEIEGGDTQKLAKWWETFQNAGRE
MRQAMAADLDGQSPKTGQRRRKTYRKKKSKPKS
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgaatacaaacgactatacaccaagcgaacctgccacaattccagagctcgctctcaat
gtaataactcgtgaagagcacaacatttcgcgtaagcagatcagtgataatgcgctgaag
gtactgtaccgcctaaatggtgctggtttcgatgcttttcttgtgggtggcggggttcga
gacttactgcttggacaaaaaccaaaagattttgacattgcgaccaacgcaactccggaa
cagatcaaacagctatttcgtaactgccgtttgattggtcgccgcttccgcttggctcat
attatgtttggccgagacatcattgaggttgcgacattccgtggccaccaccaagagcaa
aagaataagagcatttctcagcaatcaaaagagggtatgctgctgcgtgacaacgtctac
ggcaccatcgatgaagatgctgagcgccgtgatttcacgattaactcgatgtactacaac
atcgcagattactcgattcacgactacgcacgtggtattgaagatttagaagatcgccta
attcgactgattggtgatccagaaacacgctaccgtgaagaccctgtgcgcatgctgcgt
gcggttcgtttcgcggtaaaactagactttgatattgaagaagacaccgcagcgccaatc
gaacacatggcaccgttgctcggtgacattccgtcagcgcgtctttttgaagagtcactc
aaattattgcaatccggtcatggcttagaaacctaccacctactgcgtgagtacaaccta
ttccagcaactattcccgacgattgcagcgcactttacagaagattactcctctcacact
gagcagatgttggatcttgtcctagattctaccgacatgcgcatcgaagatgggaaacgc
atcaatccagcatttatgtttgctgcaatgctgtggtacccactgtgtgcgaaagccgat
gaactgatggaagagcgcaacttaggccattacgacgccattatggaagcgagcaacatc
attcttgacgagcaagttcgcacaattgccattccaagacgccacaccgcaaccattcgc
gagatttggcagttacagcttcgtcttccacgacgtaacggtaaacgtgcattccgtctt
atggagctcaataaatttagagctggctttgattttcttgaaatgcgcggtgaaattgaa
ggtggtgacactcagaagcttgccaagtggtgggaaacttttcaaaatgcaggccgagaa
atgcgtcaagcaatggctgccgacttagacggtcaatcaccgaaaacaggccagcgccgc
cgtaaaacttatcgcaagaaaaagagtaagcccaaatcatga
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