Vibrio neocaledonicus: D3H41_13840
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Entry
D3H41_13840 CDS
T06228
Symbol
truD
Name
(GenBank) tRNA pseudouridine(13) synthase TruD
KO
K06176
tRNA pseudouridine13 synthase [EC:
5.4.99.27
]
Organism
vnl
Vibrio neocaledonicus
Brite
KEGG Orthology (KO) [BR:
vnl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vnl03016
]
D3H41_13840 (truD)
Enzymes [BR:
vnl01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.27 tRNA pseudouridine13 synthase
D3H41_13840 (truD)
Transfer RNA biogenesis [BR:
vnl03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
D3H41_13840 (truD)
Prokaryotic type
D3H41_13840 (truD)
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Gene cluster
GFIT
Motif
Pfam:
TruD
Big_3_5
Motif
Other DBs
NCBI-ProteinID:
QCO87087
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All DBs
Position
1:complement(2800776..2801819)
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AA seq
347 aa
AA seq
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MSDILSSLAYLTGKPVASAKIKAQPEHFQVREDLGFAFTGEGEHLMVRIRKTGENTSFVA
NELAKACGVKSKDVSWAGLKDRHAVTEQWLSVHLPKGETPGFSAFLAQYPSIEILATDRH
NKKLRPGDLVGNEFVVTLSEVTDIADVEQRLEKVKQVGVPNYFGSQRFGNDGNNLEEARR
WGRENVRTRNQNKRSMYLSAARSWIFNRIVSARLENGVFDKFIDGDIAQTNSGTQLIDAN
NIAALQVQFAQGEAAITAALAGDNALPTQTEALALEQPFLDEEPDLMALIRGNRMRHDRR
DIALKPKDLAWTVEGNNITLTFSLDAGSFATSIVRELVNEVEVEREY
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacattttatcttcattggcttacctaacgggtaagccagttgcatcggcaaaa
attaaagcgcagccagagcattttcaggttcgcgaagatttaggttttgcctttacgggc
gaaggcgagcacctaatggttcgtatccgtaaaacgggcgagaacaccagcttcgttgct
aacgagttagcgaaagcctgtggtgttaagtcgaaagacgttagctgggcgggtcttaaa
gaccgtcatgcggtgacggaacagtggttaagtgtccatttaccgaaaggtgaaacgcca
ggtttttcagcgtttttggctcaatacccaagtatcgaaatccttgcaacagatcgtcac
aataaaaaactgcgtcctggtgacctagtagggaacgagttcgtggttactttgtctgaa
gtgacagatatagcggatgtagagcaacgtcttgaaaaagtgaaacaagttggcgtgcca
aactactttggtagtcagcgttttggtaacgatggcaacaaccttgaagaagcacgtcga
tggggacgcgaaaacgttcgtacccgcaatcaaaacaagcgcagtatgtatttatcagcg
gctcgttcgtggattttcaaccgtatcgtttcagctcgtctagagaatggtgtgtttgat
aagttcattgatggtgacattgcgcagacgaattctggcactcagttgattgatgcaaac
aacattgctgctctgcaagtgcaatttgcgcaaggtgaagcggcaattaccgctgcgctt
gctggcgataatgcactgcctactcaaactgaggctctggcattagagcaaccgttttta
gacgaagagcctgacctcatggcgctgattcgtggtaatcgcatgcgccacgaccgtcgc
gatattgcgctaaagccaaaagatttagcttggacggttgaaggtaacaacattacgctg
actttctcactggatgcgggatcttttgcgacctctattgttcgtgagttagttaatgag
gttgaagtagaaagagaatactaa
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