Vibrio neocaledonicus: D3H41_14580
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Entry
D3H41_14580 CDS
T06228
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
vnl
Vibrio neocaledonicus
Brite
KEGG Orthology (KO) [BR:
vnl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vnl03021
]
D3H41_14580 (rapA)
Transcription machinery [BR:
vnl03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
D3H41_14580 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
AAA_34
RelB-like
WWE
Motif
Other DBs
NCBI-ProteinID:
QCO87205
LinkDB
All DBs
Position
1:complement(2929127..2932036)
Genome browser
AA seq
969 aa
AA seq
DB search
MTFALGQRWISDTESDLGLGTVVAMDARTVTLMFAASEENRVYARNDAPVTRVTFNVGDV
IDCQEGWSLKVEEVLEDEGLYTYFGTREDTQETAVVLREIFLSNQIRFNKPQDKLYAGQI
DRMDNFVLRYRALTNQFEQHKSPMRGLCGMRAGLIPHQLYIAHEVGRRHAPRVLLADEVG
LGKTIEAGMIIHQQVLSGRAERILIVVPETLQHQWLVEMMRRFNLHFSIFDEERCIEAFA
DAENPFDTQQYVLCSLDFLRKSRKRFEQALEGEWDLLVVDEAHHLEWSQDKPSREYQVVE
GLAERTPGVLLLTATPEQLGRESHFARLRLLDPDRFYDYEAFVEEEEQYAPVADAITSLF
SGEKLPNEAKNQITELLSEQDVEPLFRIIESEADEEAKASARQELIDNLMDRHGTGRVLF
RNTRAAIKGFPKRNVHLMPMDIPPQYTTSMRVAGMIGGKMSSEARAMKNLYPEEIFQEFE
GDDASWWQFDSRVNWLLEKVKEKRSEKILVIASRASTALQLEQALREREGIRATVFHEGM
SILERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLD
RIGQNRDIDIHVPYLKGTSQAILARWFDEGLNAFAETCPTGRAVYDKYSDDLIEILASGD
TSTLDEIIEASAKMNKELKSQLEQGRDRLLEMHSNGGEKAQQIVEKIESTDGDTNLVTFA
LSLFDTIGLNQDDKGENALIVTPSEHMMVPSYPGLPYEGATITFDRDTALSREDMHFISW
EHPMIQGGIDLLMSEGVGTSAVSLLKNKALPVGTILLELIYAVDAQAPKRSGIARFLPKT
PIRLMMDSRGNDLSAQVEFESFNRQLSPVNRHLGSKLVTSVQKDVHRLIEAGDVLIEEKV
EEVRKQAHQDMQHSLNAELERLQALKAVNPNIRDEEIEAIDAQIKELTGYINQAQVQLDS
LRLIVVSHN
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgctttggggcagcgctggattagcgatacggaaagcgatttaggtttaggt
accgttgtagcaatggatgctcgtactgtgacattgatgtttgcagcgtcagaggaaaac
cgagtttacgcacgtaacgatgcacctgttacccgagtcacctttaatgttggggatgtc
atcgattgccaagaaggttggtctctaaaagtagaagaagtactggaagatgaaggtctt
tacacctatttcggtactcgtgaagacacgcaagaaaccgctgttgttctgcgtgagatt
ttccttagcaaccaaattcgttttaacaaacctcaagataagttgtacgccggtcaaatc
gaccgtatggacaactttgttctgcgttaccgtgcgctaaccaaccagtttgagcagcat
aagagcccaatgcgtggcctatgtggtatgcgtgcaggtttgatccctcatcagctttac
atcgcgcacgaagttggccgtcgtcacgcgccacgcgtcttgttggcggatgaggtaggt
ttgggtaaaaccatcgaagcgggcatgatcatccaccaacaagttctgtctggtcgtgcc
gaacgcattttgattgtggtgcctgaaacactgcagcatcaatggctggttgagatgatg
cgtcgtttcaatctgcatttctctatctttgacgaagagcgctgtatcgaagcttttgcg
gatgcagaaaacccatttgatactcagcaatatgtgctgtgttctttggatttcctacgc
aagagccgcaagcgttttgaacaagcactggaaggtgaatgggacctactggttgtcgat
gaagcgcatcaccttgaatggagccaagataaaccgagccgtgaataccaagtggtagaa
ggcttggctgaacgtactccaggtgtgttgctactgactgcaacgccagagcagcttggt
cgtgagagtcactttgctcgtctgcgtttattggacccagaccgcttctatgattacgaa
gcattcgttgaggaagaagagcaatacgcgcccgtagcagatgcgattacttcactcttt
tccggtgaaaagctacctaatgaagcaaaaaaccagatcactgagttattgtctgaacaa
gacgtagaaccacttttccgcattatcgaaagtgaagcggacgaagaagctaaagcgtcg
gcacgccaagagctgatcgataacttgatggatcgtcatggtacagggcgtgttctgttc
cgtaacacgcgcgcggccatcaaaggcttccctaagcgtaacgtgcatctgatgccaatg
gatattccaccgcaatacactacatcaatgcgtgttgctgggatgattggcggtaagatg
agttctgaagcacgtgcgatgaagaacctttacccggaagaaattttccaagaatttgaa
ggcgatgacgcgagctggtggcagtttgactcgcgtgtgaattggttgcttgaaaaagta
aaagagaagcgcagcgagaaaatcctcgtgattgcttctcgtgcgagtaccgcactgcaa
ttggaacaagcactgcgtgagcgtgaaggtatccgcgccaccgttttccacgaaggtatg
tcgattcttgaacgtgacaaagcggcggcttactttgcgcaagaagaaggtggagcacaa
gttcttatctgtagcgaaatcggctctgaaggtcgtaacttccagtttgccaaccaactt
gtcatgttcgacttgccattcaacccagacttgcttgagcaacgtattggtcgtttggac
cgtatcggtcaaaatcgcgatatcgacattcatgttccttacctgaaaggcacatcgcaa
gcgatcctagcacgttggttcgatgaaggcctgaacgcttttgcggaaacctgcccaaca
ggccgtgctgtttacgataagtactccgatgatctgattgaaattcttgcctctggtgat
accagcacgctagatgagatcattgaagcgtcagcaaaaatgaataaagagctgaaatcc
caattggagcaaggccgtgatcgcctattagaaatgcattcaaatggcggggaaaaagca
caacaaatcgttgagaaaattgaatcaaccgacggcgataccaatctggtcaccttcgca
ctttctctttttgacacgattggcttgaatcaagacgataaaggtgaaaacgccctgatt
gtgaccccatctgagcacatgatggtgccaagctacccaggtctgccatacgaaggagcg
acgatcacgtttgatcgtgatacagcgttatctcgtgaagatatgcactttatcagttgg
gaacacccaatgatccagggtggtatcgatcttcttatgagtgaaggggtggggacgtct
gcggtatctctattgaaaaacaaagcgttaccagtcgggactattcttcttgagttgatt
tacgcggtagatgcgcaagcgccaaaacgcagtggtatcgcgcgcttcttaccgaaaacg
ccaatccgtttaatgatggactcgcgtggtaatgatttgtctgctcaagtggagtttgaa
agctttaaccgccagctcagccctgtaaaccgtcacttaggtagcaagttggttacgtcg
gtacagaaagatgtacaccgcttaattgaagccggtgatgttcttattgaagagaaggtt
gaagaagtacgcaaacaagctcatcaagatatgcagcacagtttgaatgcagaacttgag
cgtttgcaagcactgaaagcggtgaacccaaatattcgtgacgaagaaattgaagctatc
gacgcacaaattaaagagctcactggttacatcaaccaagctcaggttcagctcgactcg
ctgcgtttgattgtggtgagccacaactaa
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