Vibrio neocaledonicus: D3H41_16345
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Entry
D3H41_16345 CDS
T06228
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
vnl
Vibrio neocaledonicus
Pathway
vnl03420
Nucleotide excision repair
vnl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vnl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D3H41_16345 (uvrD)
03430 Mismatch repair
D3H41_16345 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vnl03400
]
D3H41_16345 (uvrD)
Enzymes [BR:
vnl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D3H41_16345 (uvrD)
DNA repair and recombination proteins [BR:
vnl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D3H41_16345 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
D3H41_16345 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
AAA_12
AAA_11
Motif
Other DBs
NCBI-ProteinID:
QCO87482
LinkDB
All DBs
Position
1:complement(3300378..3302552)
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AA seq
724 aa
AA seq
DB search
MMDPSLLLDGLNDKQREAVAAPLENLLVLAGAGSGKTRVLVHRIAWLMSVEQASPFSIMS
VTFTNKAAAEMRGRIEELMMGSAGGMWNGTFHGICHRILRAHYLDAKLPEDFQIIDSDDQ
QRLLKRLIKAQNLDEKQWPARQVAWWINGKKDEGLRPSHIDAYHDPVTKTYLQLYTAYQE
ACDRAGLVDFAEILLRAHELLRDNKFVREHYQARFKHILVDEFQDTNNIQYAWLRMMAGP
ECHVMIVGDDDQSIYGWRGAKVENIEKFTLEFPSVNTIRLEQNYRSTKTILEASNTLIAN
NTERMGKELWTDGVVGEPISVYSAYNELDEARFAVNKIKEWQDKGGALNDAAMLYRNNAQ
SRVLEEALIQAGLPYRIYGGMRFFERQEIKDALSYMRLIANRNDDAAFERVVNTPTRGLG
DKTLETIRFAARDRGCTMWEASVAMLDEKVLAGRAAGALSRFIELVTALEDDTLEMPLHH
QTDHVIKYSGLFAMYEQEKGEKSKARIENLEELVTATRQFEKPEEAEDMSLLTAFLTHAA
LEAGEGQADEFEDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRLC
YVGMTRAMQKLYITYAEMRRLYGQDKYHKPSRFIRELPETCLDEVRMKAQVSRPSSSGRF
SQTVVKESFNETGFTLGSRVMHPKFGEGTIINFEGSGPQSRVQIAFNGEGIKWLVTAYAR
LEKL
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgatggatccatctctattactcgacggtttgaacgataaacagcgtgaagccgttgca
gcacctctagaaaacttgctcgttcttgctggcgcaggaagtggtaagacacgcgttctt
gttcaccgtatcgcttggctgatgtcggtcgagcaagcttctccgttctcaattatgtcg
gtaacctttaccaataaggcggcggcagagatgcgtggacgtatcgaagagctaatgatg
ggcagtgcaggcggtatgtggaatggtactttccacggcatttgtcaccgtattctgcgt
gcacactatcttgatgccaagctaccggaagatttccaaatcattgacagtgacgaccag
cagcgtctgctaaagcgtttgatcaaagcgcaaaacctcgatgagaagcaatggcctgca
cgccaagtggcatggtggattaacggtaagaaagacgaaggtctgcgcccgtcgcacatt
gatgcgtaccatgatccagtgaccaagacatatctgcagttgtacaccgcttaccaagag
gcgtgtgaccgtgctggtttagtcgattttgcggaaatcttgctgcgcgcacatgagcta
ctgcgtgataacaagttcgtccgtgaacactaccaagcacgctttaagcatatcttggtg
gacgagttccaagataccaacaacattcaatatgcttggctacgtatgatggcgggtcct
gagtgtcacgtgatgatcgtaggtgatgacgaccagtcgatttatggttggcgtggtgca
aaagtcgagaacattgagaagtttacgctcgaattcccaagcgtgaataccattcgtctt
gagcaaaactaccgttccactaagaccattctggaagcatctaacaccctgattgcgaat
aacaccgagcgtatgggtaaagagttgtggacggatggcgtggtcggtgagcctatctcg
gtttacagcgcttacaacgaattagatgaagcccgttttgcggtgaacaaaatcaaagag
tggcaagacaagggcggtgctctgaatgacgctgcgatgctttaccgtaacaacgcccag
tcgcgtgttctggaagaagcgttaattcaagccggtctgccttatcgtatctatggcggc
atgcgattcttcgaacgtcaggaaatcaaagatgccttgagctacatgcgtctgattgcc
aaccgtaacgatgatgcagcgtttgaacgtgtggtgaatacgccaacgcgtggtttgggc
gataagacgcttgaaaccatccgttttgcggctcgtgaccgtggttgcaccatgtgggaa
gcgagtgtagctatgttggacgagaaggtgcttgctggtcgcgctgctggtgctctgagc
cgttttatcgagcttgtcaccgcgctagaagacgacaccttagagatgccgctgcatcac
caaactgaccatgtgattaaatactcgggcttgttcgcgatgtacgagcaagagaagggc
gaaaagtctaaggcacgtattgagaacttggaggaattggtgaccgcaactcgccaattc
gagaaaccagaagaagccgaagacatgtcactgctgacggcattcctaacccacgcagca
ctagaagcgggcgaaggacaagcggacgaatttgaagatgcggttcagctcatgacatta
cacagtgcgaaaggtctagagttcccattggtgtttatggtcggtgtggaagaaggcatg
ttcccaagccaaatgtcggcagaagaagcagggcgcttagaagaagaacgtcgtctgtgc
tacgtaggcatgacccgtgcgatgcagaaactgtacatcacttatgctgaaatgcgccgt
ttgtatggtcaggataagtaccataaaccgtctcgctttatccgtgaactgccagaaaca
tgcttggatgaagtacgaatgaaggcgcaagttagccgtccttcaagcagtggtcgattt
agccaaactgttgtgaaagagagctttaatgaaaccggctttacgctaggttctcgtgtg
atgcatccaaagtttggtgaaggcaccatcatcaacttcgaaggcagtggtccacagagc
cgtgtacagattgcctttaatggtgaaggcatcaaatggttggtaactgcttacgcacga
ctagagaaactgtaa
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