Vibrio neocaledonicus: D3H41_16995
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Entry
D3H41_16995 CDS
T06228
Symbol
rnb
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
vnl
Vibrio neocaledonicus
Brite
KEGG Orthology (KO) [BR:
vnl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vnl03016
]
D3H41_16995 (rnb)
Enzymes [BR:
vnl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
D3H41_16995 (rnb)
Transfer RNA biogenesis [BR:
vnl03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
D3H41_16995 (rnb)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
QCO87734
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All DBs
Position
2:complement(28793..30796)
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AA seq
667 aa
AA seq
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MFQDNPLLAQLKQQIQENLPKKEGSIKATDKGFGFLEVDSKTSFFIPPAYMKKCMHGDKV
VAIIRTENEREVAEPQELLEQAVTRFIGRVKMFKGKLNVAPDHPQLKKLSLKAKLKKGLK
PDEFAEGDWVVAHLIRHPLKGDNSFFVEISEKITDANDKIAPWWVTLAQNDLPNSEPAGI
DNWELKDDAELERVDMTHVPFVTIDGESTKDMDDALYAKKTISGDFELTIAIADPTAYIT
PEDEMDKVARERGYTIYLPGRNIPMLPRDLADNLCSLIEGETRPAICCTVTVSKDGVIGD
DIKFFAANIKSHARLAYDHVSDWLENGSSEAWTPSEEIATIVRDLYEFSLARAEWREKNA
VVFPDRPDYRFELSEDNDVIAIHADMRRSANRLVEESMITANICAGRTLRDKFETGVFNT
HAGIKNEKIEEVVQLVNPEGQLEFTAESIATLEGFAALRRWLAAQETSYLDNRIRKFQAY
SEVGNQPLPHYAMGLDIYATWTSPIRKYGDMINHRMLKAVILGKEPVQKPDDQVGEELAL
HRKHHKIAERNVSDWLYARTLADEPSKKTCFTGEIFDINRAGARVRLLENGAAAFIPGAL
ILDNKERIECNGDNGTISIDKEVVYKLGDTLEIVLTDVNQENRSLVAKPTQVFAEQPAAQ
TEQTVSE
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataacccactactcgctcagcttaagcagcaaatccaagaaaacctgcct
aaaaaagaaggctcaataaaagccacagataaaggctttggctttttggaagtggacagt
aagacgagcttcttcatcccgcctgcgtacatgaaaaagtgcatgcacggtgacaaagtc
gtcgccattatccgcaccgaaaatgaacgcgaagttgcagagccacaagagctgctggaa
caagccgtgactcgctttattggtcgagtaaaaatgttcaaaggcaagctcaacgtagca
cctgatcacccacagcttaaaaagctatctcttaaagcgaaactaaagaaaggtctaaaa
cctgacgagttcgccgaaggtgattgggttgtcgcacatcttattcgccaccctctaaaa
ggcgataactctttcttcgtagaaatttctgaaaaaatcactgacgcgaatgataaaatt
gcgccttggtgggtaacgcttgctcaaaacgatctaccaaactctgagccagcaggcatc
gataactgggaactgaaagacgacgcggagctagaacgcgtagacatgactcatgttcca
ttcgtcactatcgacggtgaatcgactaaagatatggacgatgcgctgtacgcgaagaaa
actatatctggcgatttcgaactcaccatcgctattgcggacccaaccgcctacatcaca
cctgaagatgaaatggataaagtagcgcgtgagcgtggctatactatttatcttccagga
cgcaacatcccgatgctacctcgcgatttagcggacaacctatgttctctgattgaaggt
gaaacccgccctgctatttgctgtaccgtaacggtaagtaaagatggtgtgattggcgac
gatattaaattcttcgcggcaaacatcaaatcacatgcacgcctagcatacgatcacgtg
tctgattggttagaaaacggcagctctgaagcatggacgccatctgaagagatcgcgacc
atcgttcgtgatctttatgagttctctcttgctcgcgctgaatggcgtgagaaaaacgca
gtagtcttccctgatcgtcctgactaccgttttgagctcagtgaagataacgatgtaatc
gctatccacgcagacatgcgccgcagtgcaaaccgccttgttgaagaatccatgattacc
gcaaacatctgtgcaggtcgtacattacgcgataaatttgaaacaggtgttttcaatacg
catgctggtatcaagaacgagaagattgaagaagtggttcaacttgtcaatccagaaggc
cagttggagttcacagcggagtctattgctacactagaaggctttgctgcattgcgccgc
tggttggctgctcaagaaacgtcttacctagataaccgtattcgtaagttccaagcatac
agtgaagtgggtaatcagcctctgcctcattacgcaatgggtttagacatctatgcaact
tggacatcaccaattcgtaaatacggtgatatgatcaaccaccgtatgttgaaggccgtc
atccttggtaaagaacccgtacaaaaaccagatgaccaagtaggcgaagagctagctcta
catcgtaaacatcataaaatcgctgagcgaaatgtctcagattggctatatgcacgtacg
cttgctgatgagccgagcaagaaaacttgtttcacaggtgagattttcgatattaatcgt
gcaggcgcacgtgtccgacttctcgaaaatggcgcagcagcctttattcctggtgcacta
attcttgataataaagaaagaattgagtgcaatggcgacaacggtaccatctctatcgat
aaagaggtcgtatacaaacttggggatacattggaaattgtccttacggacgtaaaccaa
gaaaaccgcagtttagttgcaaagccaacccaggtattcgctgaacaaccagcagcacaa
acagaacagactgtaagtgaataa
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