Vibrio neocaledonicus: D3H41_17000
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Entry
D3H41_17000 CDS
T06228
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vnl
Vibrio neocaledonicus
Pathway
vnl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vnl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D3H41_17000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vnl03019
]
D3H41_17000
03009 Ribosome biogenesis [BR:
vnl03009
]
D3H41_17000
Enzymes [BR:
vnl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
D3H41_17000
Messenger RNA biogenesis [BR:
vnl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D3H41_17000
Ribosome biogenesis [BR:
vnl03009
]
Prokaryotic type
rRNA helicases
D3H41_17000
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Cas3-like_C_2
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QCO87735
LinkDB
All DBs
Position
2:31210..33141
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AA seq
643 aa
AA seq
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MQDSVIQFSDLSLNDSILSALDGMGFVSPTPIQAAAIPHLLEGADALGKAQTGTGKTAAF
SLPLLNKLDLNQRKPQAIVLAPTRELAIQVAAEMKNLGKNIKGLKVLEIYGGASIVDQMR
ALKSGAHVVVGTPGRVQDLINRERLHLDEVSTFVLDEADEMLNMGFVDDVTAIMEHAPES
AQRVLFSATMPPMLKKIVERFLRDPVTVDVAGKNHTVDKVQQQFWVVKGVEKDEAMSRLL
ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI
ERVTKSSMEEIQLPLRDQVAEARLAKLGAELEAEKEHKALDKFAELVEKLQTSLDIDPAT
LAAMLLKRQQGKRPLFYIGEDPMVEAIERDKQRRKERREGGRDGGRNFNNQDWDTYQLQV
GREQGVQVKDIVGALANELGLGKGSIGAIKLAQGHTFVQLPKAMTSDAANKLSKLRIRQQ
DVGAVVCDFDDFRESRGGRRDGGRRDGGRRDGGGYRGNREGGNRGGDRREGGRREGGFRG
NRDGNRDGNREGGERRFDRNRGGDHRGAHRGERGHGRGRRTDA
NT seq
1932 nt
NT seq
+upstream
nt +downstream
nt
atgcaagattctgttattcaattcagtgatttatctctgaatgattctatcctttctgct
ctagacggaatgggtttcgtgtcaccaactccaattcaggctgcggcaatcccacaccta
ttggaaggtgctgacgcgctgggtaaagctcaaacaggtacaggtaaaacagcagcgttc
tctctgcctcttctcaacaaactcgatctaaaccaacgcaaaccgcaagcgattgtactt
gctccgactcgtgagctggcaattcaggttgcagcggaaatgaaaaaccttggtaaaaat
atcaaaggtttgaaagttctagagatttacggtggcgcatctattgtcgaccaaatgcgt
gctcttaaaagtggcgctcatgtagttgtcggtactccaggccgtgttcaagatcttatc
aatcgcgaacgtctacacctagacgaagttagtactttcgttcttgatgaagcagacgaa
atgctaaacatgggtttcgtagatgacgtaactgcgatcatggagcacgctccggagtca
gcacagcgcgttctgttttctgcaacgatgcctccaatgctgaagaagatcgttgaacgt
ttccttcgtgaccctgtaacggttgacgttgctggtaaaaaccacactgtagacaaagtt
caacaacagttctgggtagtgaaaggtgtagagaaagatgaagcaatgtctcgtcttctt
gaaactgaagaaactgacgcgtcaatcgtattcgtacgtactcgtcaagatactgagcgt
ctggctgactggctatctgcacgtggcttcaaagcagctgcactgcacggtgacattcct
cagtctctacgtgaacgtactgttgatcacatcaaacaaggtgttattgacatcctagtt
gcaactgatgttgtagctcgtggtcttgacgttccacgtattacgcacgtattcaactac
gacatcccatttgatgttgagtcatacatccaccgtatcggtcgtactggccgtgctgga
cgtaagggtaaagcgatccttctagttcgcactaaccaaattcgtatgcttcgcactatc
gagcgtgtaactaagtcatctatggaagaaatccaacttcctctacgtgaccaagttgct
gaagctcgtctagctaagctaggcgctgagcttgaagcagagaaagagcacaaagcacta
gacaaatttgctgagttggtagagaaactacaaacttctctagacatcgacccagcaaca
cttgctgctatgcttcttaagcgtcagcaaggcaaacgtcctctgttctacattggcgaa
gacccaatggttgaagcaattgagcgtgacaagcaacgtcgtaaagagcgtcgtgaaggt
ggtcgcgatggcggtcgtaacttcaacaaccaagactgggatacttaccagcttcaagtt
ggtcgtgagcaaggcgttcaagttaaagacatcgttggcgctctagcaaacgaactaggt
ctaggtaaaggttctatcggtgcgatcaagctagctcaaggtcacacattcgtacagcta
cctaaagcaatgacttcagacgcggcgaacaagctaagcaaactacgcatccgtcaacaa
gatgttggtgctgtagtatgtgatttcgatgatttccgcgagtctcgtggtggtcgccgt
gacggtggtcgtcgcgatggtggtcgtcgtgatggaggtggttaccgtggcaaccgcgaa
ggcggcaaccgtggtggtgatcgtcgtgaaggcggccgtcgcgaaggtggcttccgtggt
aaccgtgacggcaaccgcgatggcaatcgtgaaggtggcgaacgtcgtttcgatcgcaac
cgtggtggtgatcaccgtggtgcacatcgtggtgaacgtggtcacggtcgtggccgtcgt
acagacgcataa
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