Vibrio neocaledonicus: D3H41_17745
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Entry
D3H41_17745 CDS
T06228
Name
(GenBank) SMC family ATPase
KO
K03546
DNA repair protein SbcC/Rad50
Organism
vnl
Vibrio neocaledonicus
Brite
KEGG Orthology (KO) [BR:
vnl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vnl03400
]
D3H41_17745
DNA repair and recombination proteins [BR:
vnl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
D3H41_17745
Archaeal homologous recombinant proteins
D3H41_17745
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
AAA_21
AAA_5
zf-NADH-PPase
Motif
Other DBs
NCBI-ProteinID:
QCO87879
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All DBs
Position
2:202305..205361
Genome browser
AA seq
1018 aa
AA seq
DB search
MKPIKLTMQAFGPFAKTEIIDFEKLGSNPLFLINGPTGSGKTSILDAICFALYGETTGNE
RQGIQMRCDLSAQDLPTEVVLEFSLHGKQYRVVRSPEQEAPKARGEGMTIKKHTAALYEL
GETETLITSKTTQVKTEVSNIIGLNETQFRQVMVLPQGKFRELLLASSKEREEIFGQLFQ
TDIYKKIEYALKDKSSAISKAKGEFDNQIRGALQVAEASSEQELLQQLEQVTKQLESDKK
NEQAALDKLNTAKSELQKAETLNGEFSKREQAESALKLHLEHSDSIKARQQQLENAKNAN
KIELPYISLQNAKAQTQELRQKIVALKESLEKAHVVAREQENLQQSAKEAAAKVPQLTQL
QYQLESMKNKLVEKDNLESKITAGYQQKQQFEATLKQYIELKDKLTLQAQQGQKELEKAR
VDVALIGSIDAEIKQKQRLLQDLKKLHDLTLELSKLNALTVGKQQSLHEASHRYMQRQQA
ADTIELKWHNAQAAVLAQRLKAGEACPVCGSETHPNPATFVEEAVTKEQVQAARAKEREA
QTLLNQLSNQLEQHNVVISQYQNQYNQLKEELGEYATSEISTVQNDLQALNAQLLRLQAI
DIEKLERNVEQLNQRCVVGENKIHELQNQMAANESTVKANQEQLAQLQAFIDPKYSSADL
LEREILLTKEQILSLNTGLEKAQNALQQAILEKSNAESHLATNKQWLSESEQKLSQAELA
WNEALQASKFEDESHYLSSRVGDDELQAWQQEIDSFKQAQTKLEQTLHDLNHALKDLERP
NLESFNDRLTTLQAQYIEVRNQLDTTRSIFERLEKVRKDIAVLHEKNSKLEEEYKVFGTL
YDVASGKTGSRVSLHRFVLGVLLDDVLIQASQRLSLMSKGRYILARKTEGFKGAAGRGLD
LMVEDGYTGKTRDVATLSGGESFMAALALALGLSDVVQSYSGGIRLDTLFIDEGFGSLDP
ESLDLAIQTLVDLQQTGRMIGVISHVSELKEQMAQRIDVEPSRLGSTVSIKSQCRFAV
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccaattaaactaaccatgcaagcctttggtccgtttgcaaaaactgaaatcatt
gattttgagaagcttggcagtaaccctctatttttgattaatggtcctacaggttccggt
aaaacgtcgatcttagatgccatttgcttcgccctttatggtgaaaccacaggtaatgag
cgacaaggtattcagatgcggtgtgacttatccgcgcaagatttaccaaccgaagtagtt
ctcgaattttcgttacacggcaaacaataccgagttgttcgatcccctgagcaggaagcg
cccaaggcccgtggtgaagggatgacgattaaaaagcacactgcggctctttatgaactc
ggtgagactgaaacgcttatcaccagcaagacgactcaggttaaaactgaagttagcaat
attattggcttgaatgaaactcaatttcgtcaagttatggtgttgcctcaaggaaaattc
cgagaactgttgcttgctagctctaaagagcgtgaagaaatttttggccagctctttcaa
actgacatatataaaaaaattgagtacgcgctcaaagataaatcgagtgcaattagtaaa
gcgaaaggcgaatttgataatcaaattcgaggtgctttacaagttgcagaagcgagttct
gaacaagagctattacaacaactggaacaagtaactaagcaattagagtctgataaaaag
aatgagcaagcagcgttagataagctcaatactgctaaatctgaattgcaaaaagcggaa
accttgaatggagagttttcgaaacgagagcaagcagaaagcgcactcaagctgcatcta
gaacactcagattcgataaaagctcgtcaacagcaattagaaaacgctaaaaatgccaat
aagatagagttgccctacatctcattacaaaatgcaaaagctcaaacgcaagagcttagg
caaaaaatcgtagctttgaaagagagtctcgaaaaagctcatgtcgttgcgagagaacaa
gaaaacttgcagcaaagtgcaaaagaggccgcggcaaaggtcccgcagttaacgcaactg
cagtatcagcttgaaagtatgaaaaacaagttggtcgagaaagacaatttggaaagtaaa
ataacggcgggttatcaacaaaaacaacaatttgaagcaacgttaaaacagtacatagaa
ctaaaagataagttaacgttacaggcccagcagggacagaaggagctagagaaagcacga
gttgatgttgcgcttattggcagcatcgatgcggaaataaaacaaaaacaacggctgcta
caggatctaaaaaagctgcatgatcttactttagagctctctaaactcaatgcgctaact
gtaggtaagcagcagtcactacacgaagccagtcatcgctatatgcagcgtcaacaagcc
gctgatacgatagagcttaagtggcacaacgctcaagcggcagtattagcgcagcgacta
aaagcaggtgaagcatgcccggtgtgtggtagcgaaacgcatcctaaccctgcaacgttt
gttgaagaagccgttacaaaagagcaagttcaggcggctagagcgaaagagcgagaagct
caaaccttgttgaaccaactaagcaatcagctagaacaacataacgttgtcattagtcag
tatcagaatcagtataaccagttgaaagaggagttgggtgagtatgctacatctgagatc
tcgacggttcaaaatgatttgcaagcgcttaatgctcaactcctacgtctacaagctatt
gatattgaaaaactagaaaggaacgttgaacagcttaatcaacgctgcgtcgtgggtgaa
aataaaattcatgagctgcagaatcaaatggcggcaaatgaatcaaccgttaaagcgaac
caagaacaattggctcaattacaagcttttattgacccaaaatacagttccgctgacttg
cttgaacgtgaaattttgctgacaaaagagcaaattctgagtttgaacacaggcttagaa
aaggcgcaaaacgctttgcagcaagcgatcttggagaaatcaaatgcggaaagtcactta
gcgacgaacaagcagtggttatctgagtcagagcaaaaacttagccaagcagaattagcg
tggaatgaggcactacaggcgagtaaatttgaagatgaaagccattatctaagtagtcga
gtgggagatgatgaacttcaagcctggcagcaagaaatagacagcttcaaacaggcacaa
accaagcttgagcaaacactacatgatttaaatcatgcattgaaagatcttgaaaggcct
aatttagagtcgtttaacgacaggttaaccactctgcaggcgcaatatattgaagtaagg
aatcaacttgataccacacgctcaatatttgaacgtcttgaaaaggttcgtaaagatatt
gccgtgttgcatgagaaaaatagtaagttagaagaagaatacaaagtctttggtacgttg
tacgacgttgctagtggtaaaacaggcagcagggttagcctacatcgctttgttcttggt
gtactgttggatgatgtgctgattcaggcctctcaacgtttaagccttatgagtaaaggg
cgctatattcttgctcgaaaaacagagggcttcaaaggtgctgcgggccgcggcttagat
ttaatggttgaagatggctacacaggaaaaacgcgtgatgttgcgacactttccggcggt
gaatcatttatggcagcgcttgctctggcacttggtttgtcggatgttgtgcaatcctat
agtggcggtattcgtttagacactttatttattgatgagggcttcggtagtttagaccca
gagtctttagatcttgctattcaaacgctagtggacctgcaacagactgggcgcatgatc
ggtgttatttctcacgtttctgagttgaaagaacaaatggcgcagaggattgatgtagaa
ccatcaagacttggttcaacggtgtcgattaaatctcaatgtcgcttcgctgtctaa
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