KEGG   Vibrio neocaledonicus: D3H41_19880
Entry
D3H41_19880       CDS       T06228                                 
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
  KO
K11914  sigma-54 dependent transcriptional regulator
Organism
vnl  Vibrio neocaledonicus
Brite
KEGG Orthology (KO) [BR:vnl00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:vnl03000]
    D3H41_19880
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:vnl02044]
    D3H41_19880
Transcription factors [BR:vnl03000]
 Prokaryotic type
  Helix-turn-helix
   Other families
    D3H41_19880
Secretion system [BR:vnl02044]
 Type VI secretion system
  Imp/Vas secretion system related proteins
   D3H41_19880
SSDB
Motif
Pfam: Sigma54_activat Sigma54_activ_2 HTH_8 HTH_50 GAF AAA_5 GAF_3 AAA_2 TACC_C AAA_3 Sipho_Gp157
Other DBs
NCBI-ProteinID: QCO88273
LinkDB
Position
2:673605..675236
AA seq 543 aa
MRSANHSELSNALLAISQSLADRSQLTQTLDAVLTAARQMTLAKHGIIYVLDQTGQALIP
STAHHNDKTIVSHPWEALQLDSASENDPFNFAIRNGEVVLINELYKYNGYDCESIYQTEQ
TLGLKSENLLAWPLIDSESKTIGLLVLLDLSVIDNEAALTEFCRMAASNIRQAVWLEQYG
QVIKNLNADNHALMRENTQLKKRTQKTYQGPIAESEEMLNVLNRLDKVLSLPVDVLLRGE
TGAGKEVIAKYIHENSNRSEQPLIVQNCAAIPEQLLESELFGHKKGSFTGADKDKVGLFE
AANGGTLFLDEIGDMPMLLQAKLLRVLQERKVRPIGTSKEIEVDVRVIAATHCNLMQQIK
DGGFRADLFYRLNVFPITLPPLRARKSDIIPLAEHFVQHTTNTLGLPQAPGLSANVRKQL
LAYQYPGNVRELKNIIERSVLLSDFETITHIEFGEQIPEDVPSIDMKAASPTPEQPAYEQ
QAQADLEDVSKSLKDVVSQYERTVIIDCLNACNWHTKKAAEQLALPMSTLNHKMKKYDIS
AAG
NT seq 1632 nt   +upstreamnt  +downstreamnt
atgcgttcagctaaccatagcgaacttagtaacgccctacttgcgatcagtcagtctttg
gctgatcgcagccagcttacccaaacgttggatgctgtgttgaccgctgcgagacaaatg
accctcgcaaagcacggcatcatttacgttttggaccagactgggcaggcgttgattcca
agtaccgctcaccataacgataaaactatcgtttcccacccttgggaagcattacagtta
gactcagccagtgagaacgatccattcaactttgccattcgtaatggtgaagtggtgttg
attaacgagttgtataagtacaacggctatgactgcgaaagcatctatcaaactgagcag
acactgggattaaaaagcgagaacttattggcttggcctttgattgatagcgaaagcaaa
accattggactgttagtcttactcgatttaagtgttatcgacaatgaagctgcattgact
gagttttgtcgtatggccgcgagtaatattcgccaagctgtgtggttagagcaatacggg
caagtgattaaaaatctcaatgccgacaatcacgccctaatgcgtgagaacactcaactc
aaaaagcgtacccaaaaaacctatcaaggtcctattgcagagagcgaagaaatgctcaat
gtcttgaatcgtcttgataaggtgttatctctccctgtcgacgttctattgcgtggtgaa
acgggcgctggtaaagaggtgatcgcgaaatacattcacgaaaactctaaccgttcagaa
cagcctttgatcgtacagaactgtgccgcaatcccagagcagttattagagtcggaactc
tttggccataagaaaggctcattcactggcgcggacaaagacaaagtcggtttgtttgaa
gcagccaacggcggcacgcttttcctagatgaaattggcgatatgccaatgctactgcag
gcaaagttactgcgtgtactacaagaacgcaaagttcgccctatcggtaccagcaaagag
attgaggtggacgttcgcgttatcgccgcaacccactgtaatcttatgcagcaaatcaaa
gatggcggattccgtgccgatttgttctatcgtttgaatgtgttccctattacattacca
ccattgagagctcgcaagtcagacattattccccttgctgaacatttcgtgcaacacaca
accaacacgctaggtttgccgcaagcgccagggttaagtgccaacgtacgtaaacagctc
cttgcctaccaatacccagggaacgtgcgtgagcttaagaacatcatcgagcgctcggtg
ctactgtccgattttgaaaccattactcacattgagtttggcgaacaaatcccagaagat
gtaccaagtatcgacatgaaagcagcttcacctaccccagagcaacctgcttacgagcag
caagcacaagcggatttagaagacgtttcaaagagccttaaggacgttgtcagccaatac
gagcgtacagtaatcatcgattgcttaaatgcctgcaattggcacaccaagaaggccgcc
gagcaattggcgctgccaatgagcactctcaaccataagatgaagaaatacgatatttct
gcagcgggttaa

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