Vibrio neocaledonicus: D3H41_19945
Help
Entry
D3H41_19945 CDS
T06228
Name
(GenBank) helix-turn-helix domain-containing protein
Organism
vnl
Vibrio neocaledonicus
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
AAA_16
TPR_12
TPR_1
TPR_MalT
TPR_19
AAA_22
TPR_16
TPR_8
HTH_3
ATPase_2
NPHP3_N
ANAPC3
HTH_19
nSTAND_NTPase5
HTH_31
NB-ARC
RPN7
RsgA_GTPase
NACHT
SUCH1_C
DUF5667
ABC_tran
nSTAND1
AAA_19
TPR_9
NTPase_1
TPR_11
AAA_7
CFAP70_TPR_C
ATP-synt_ab
Motif
Other DBs
NCBI-ProteinID:
QCO88285
LinkDB
All DBs
Position
2:713583..716756
Genome browser
AA seq
1057 aa
AA seq
DB search
MANRDGRIPLNVLRLKELRKKLGLSQEKLAEECFQQGFVVSIASIKRAESGANVLYRTAS
NLAEYFSVPVEDLLIDRASEPLFTNVSSSPPYFFIFAIEAKCDLTAKALQTLLLSQNTTP
IIQNRTFVLTWSLQESDEYIFERIRQLALQLKVALSASIRSFINVKYMHRITELSEHPNA
ITPINEILVKIPWGEIAACPCFISSNCARPIKPFLTGEPDFNNWHFVSLHQNHTDCFVGR
KLELETLNSGIKRWQKQEAGQTYCITGTAGIGKTSLLNQVISSLSRSSCLTTEIQILNHG
SADLLSPQNIFTRAICSFAREDTDDSIRQQTVESSIPSSFHLCLYWLMGVTLNESEKQLL
NLMEFQTLKQTIEQSIPFLIQQRQTSKPHLIIVEDVHWADEVMLAFLETLLPYITNTNIL
LFLTFRQQKRLSSKQSWFANVNLIELRELSSEESYELACSITCQQNKHINDCIKLAKGHP
LYLRQTLLCSQFDKDVPESLEHLVSIQLAQLPAQDRQALCTASVLGQYFQLEQLREITRI
PGYVPDKLVDAGLVKLNGDQYLFHHDLICNAVFRQIDKSQCSKIHMACAKWYENRDRFLY
AVHINHAKGEGVFTVLDQTAKHYLSNYQFEKALTLIEYAIKESPKAQMAYALNMKGNCLY
SMGRIKESIEVLEQAIHHTENDSERVQYYLDLINPYRLTDNFVQAMSILDQAQALCEKLT
LNKSLCEIHSMRGNMLFPTGQLDECEKEHLLALDYSQRANCFRAKAKSLGGLGDCAYAQG
KMARSYEHLTECLQLCEEHQLLSIETANRYMLATVMIYQLQSDEALKQAQHASNLAYLTA
NRRAEIVSRLTAAWIFLDRNVLVQAENEISTALQLSKQLNAHRFVAFLLESSARLHWYQG
KEEKALSDIDTALDLVHINKLHNFIGPWLVSTKALICGDESTALSALRTGEAWLESTCVG
HNYLRFYQQGIQVAWQYKQPTLLRKYRDKLSNFTQEDPHPWGDVYIEQANLMLALLDQSS
SVSELLNFNQAARKHQLNQAQISVDELDHGLSTSTQP
NT seq
3174 nt
NT seq
+upstream
nt +downstream
nt
atggcaaatagggatggaagaattccactcaacgtattacgactcaaagaactgagaaag
aaattaggactgagccaagaaaaactggcggaagaatgctttcaacagggttttgtcgta
tctattgcttctataaagcgagcagagtctggggcgaatgtgctgtatcgtaccgcatcc
aatctcgcggaatacttttctgtccccgtagaggaccttttaatagatcgggcctcagaa
ccattatttacaaatgtatcttcatcaccaccatatttttttatttttgcaatcgaagca
aagtgtgatttgaccgcaaaggctctgcaaaccttacttctcagccaaaacactacaccc
ataatacaaaaccgaacgtttgttcttacttggtctttacaggaatcggacgaatatatt
tttgagcgaattcgacaactagcccttcaattaaaggttgctctttcggcttcgattcgg
tcttttatcaatgtgaaatacatgcatcgaatcactgagctatcggaacatccgaatgcg
ataaccccaatcaatgaaatcctagttaaaatcccttggggagaaatagctgcttgtcct
tgctttatctcgtccaattgtgccagaccaataaaaccttttctaacaggagagccagac
ttcaacaactggcattttgtatccttacaccaaaaccatactgactgtttcgtagggcgt
aaacttgaactagaaacattgaatagcggaatcaagcgatggcaaaaacaagaagcaggc
caaacgtattgtattactggtaccgcagggataggaaagaccagcctactcaaccaggtc
atttcgtctttgagtcgttcttcgtgtttaaccacagagattcaaatcctgaatcatggc
agtgctgatctcttgtcccctcaaaatatattcactcgggcaatttgttcatttgctcgt
gaagataccgatgattctattcgtcagcagactgtcgagtcatcaattccctcttctttc
catctctgcctttattggttaatgggggtaacactcaacgaatcagaaaaacagctgctg
aacttaatggagttccaaacgctgaaacaaacgatagagcaatctatccctttcttaatt
caacaacggcagaccagcaaaccgcatttgattattgttgaagatgtccattgggccgac
gaggtaatgttggcatttcttgagacactgctaccttatattacaaacaccaatatttta
ctctttctgacgtttaggcagcaaaaacgacttagttccaaacaatcttggtttgccaac
gtgaatctaatcgaacttagggagttatcatctgaagagtcttacgagttagcgtgctca
atcacatgccaacagaataaacatatcaatgactgtataaagctcgcgaaaggccatcct
ctatacttacgccaaacactactttgttctcagtttgataaagacgttccggagtcattg
gaacatttagtttcgatacaattagctcaacttccagcccaagatcgccaagcactctgt
actgcatctgtgttggggcagtactttcaactggagcaactgcgtgaaatcactcgaatt
cccggctacgtaccagataagttagtcgacgctggcttagtaaaactcaatggcgatcaa
taccttttccatcatgatttgatttgtaatgctgttttccgtcaaatagacaagtcacag
tgttcaaaaatacacatggcctgcgcaaaatggtatgagaaccgagatcggttcttatat
gcagtccatatcaatcatgccaagggcgaaggtgtatttactgttcttgaccagaccgcc
aaacattacctgagcaattatcaatttgaaaaagcactgactcttattgaatacgctatt
aaagagtcacctaaagcacagatggcgtatgcactaaatatgaaaggaaactgcctgtat
tcgatgggacgcatcaaagagagtattgaggttcttgagcaagcgattcatcacacagaa
aatgattctgaacgtgttcaatactatttagacctcattaacccctaccgtttaaccgac
aactttgtacaagcgatgtcgattttagaccaagcccaagccctgtgcgaaaagctgacg
ttaaataaatctttgtgtgaaattcactcgatgagaggtaatatgctgttccccactggg
cagctagacgaatgtgagaaagaacatttacttgcattagattacagtcaacgagcaaac
tgttttcgcgcgaaagcaaaatcgcttggcggcctcggtgattgtgcctacgcacaagga
aaaatggctcgctcatacgagcacttaaccgagtgtttgcaactgtgtgaagagcatcag
ttgctttcgattgaaactgccaatcgctacatgctggcaacagtgatgatctatcaactg
caatctgacgaagcactaaaacaggctcagcatgcctcgaatcttgcctatctcacggca
aaccgccgagcagaaattgtttctaggcttacggctgcatggatctttctcgaccgtaat
gtcttggtgcaagctgaaaacgaaatctcgaccgctctacaactttcaaaacagcttaat
gctcatcgatttgtcgcttttcttttggagtccagtgcaagattgcactggtatcaggga
aaagaggagaaagccctttcggacatcgacacggctctagatcttgttcatatcaataag
ctacacaattttattggtccttggctcgtatctaccaaggcacttatttgtggcgatgaa
tcaacggccctctccgctttgcgcactggtgaggcttggctagaatctacctgtgttggt
cataactatttacgcttttaccaacaaggaatccaagtagcgtggcagtataagcagcct
acgctacttcgaaaatatcgcgataagctgtctaacttcacccaagaagatccgcatcca
tggggtgatgtttatattgaacaagcgaatctgatgcttgccttactcgaccagtccagc
tccgtctctgagttgttaaacttcaatcaggccgcgcgtaagcatcaactgaatcaggct
caaataagtgttgatgagctcgaccatgggctctccacatctactcaaccatga
DBGET
integrated database retrieval system
