Vibrio neocaledonicus: D3H41_24065
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Entry
D3H41_24065 CDS
T06228
Name
(GenBank) helix-turn-helix transcriptional regulator
KO
K20918
LuxR family transcriptional regulator, positive regulator of biofilm formation
Organism
vnl
Vibrio neocaledonicus
Pathway
vnl05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vnl00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
D3H41_24065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vnl03000
]
D3H41_24065
Transcription factors [BR:
vnl03000
]
Prokaryotic type
Helix-turn-helix
LuxR family
D3H41_24065
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VpsT-like_REC
GerE
Sigma70_r4_2
Sigma70_r4
HTH_30
HTH_23
HTH_40
HTH_11
HTH_24
HTH_10
DUF7342
DUF8040
FtsX
HTH_7
Motif
Other DBs
NCBI-ProteinID:
QCO89052
LinkDB
All DBs
Position
2:1582015..1582683
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AA seq
222 aa
AA seq
DB search
MEQQKKRNVILITEGSLQSSLLKDVLETKLGISVALITPDNLIHGVLHESLASAIIVDCS
VITDEIFRRYAEFKAAKQKDTLEILINCEQSISTEDLFAWRTLAGIFYTSDDIKTLQVGI
GKVLQGDMWFSRKFSQQYITYLRRHCKPINKNVSAILTKREQQIITFLSMGASNQQIAEQ
LFVSENTVKTHLHNIFKKIDVKNRVQALIWAKENISDNSLTV
NT seq
669 nt
NT seq
+upstream
nt +downstream
nt
atggagcagcaaaaaaaaagaaacgttattttaatcacggagggaagtctacagtcatct
ctgttgaaagatgtattggagaccaaactcggtattagtgttgctctaatcacgccagat
aatctgattcacggagtgttacatgagtctcttgcatcagccattattgttgattgcagc
gtgatcacggatgaaatttttcgccgttatgcggagtttaaagcggccaagcagaaagac
acgcttgaaatcttaattaattgtgagcaatccatatcgacagaagatctctttgcttgg
cgtactttggccggtattttctatacctctgatgatataaaaacgttgcaagttggtatt
ggtaaggtgcttcaaggagatatgtggttcagccgtaagttttctcagcagtacattact
taccttcgtcgacattgcaaacctataaataagaatgtttccgctattctgaccaaacga
gagcaacaaataattacctttctttccatgggggcgtccaatcaacaaatcgccgaacaa
ttatttgtcagcgagaatacggtaaaaacgcatttacataatattttcaagaagattgat
gtgaaaaatagagttcaagcacttatttgggcaaaggaaaatatttcagacaactcgtta
acggtgtaa
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