Vibrio neocaledonicus: D3H41_25040
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Entry
D3H41_25040 CDS
T06228
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
vnl
Vibrio neocaledonicus
Pathway
vnl05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vnl00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
D3H41_25040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vnl03021
]
D3H41_25040
Transcription machinery [BR:
vnl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
D3H41_25040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r1_2
Sigma70_r4
Motif
Other DBs
NCBI-ProteinID:
QCO89237
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All DBs
Position
2:1792349..1793239
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AA seq
296 aa
AA seq
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MNNECFARFRAVTDELSMKESLSVGKDPYAHYLKDIVGIDLLSREEELHYAKLNRAGDEE
AREMLIESNLRLVVKIAKGYLKRPGNNFTLLDLIEEGNIGLIKAVDKFDPEPGYRFSTYA
VWWIRENIEAALMNNGRTVRLPAHVCKEINSLALKKLDASKSESKELSISELSRCSGVKA
ERIDELVALSGFIDVSTTADLHRVPFVLELCESEYTPDPQQDCENQCFTQAIENIIKTLP
IKLQKVLIHRFGLFDQRVKTLSEIGLLLNVSNERVRQMQIEAVERVQKRLRFDGWV
NT seq
891 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacgaatgctttgctaggttccgagctgtcacggatgaactgtcaatgaaagaa
tcgttatcagttgggaaagacccttatgctcactatctcaaagatattgtggggattgat
ttgttgtctcgtgaagaggagttgcattacgccaaacttaatcgagctggtgatgaagaa
gcgcgcgaaatgttgattgagtctaatcttcgacttgttgtgaaaatcgcaaaaggttac
ctcaaacggccaggtaataactttactctgctcgatttaatagaagaaggtaacattggt
ttgataaaagcggtcgataagttcgatcctgagccaggctaccgtttttctacttatgcg
gtatggtggattcgcgagaatatagaagcggcattaatgaacaatggccgcacggtacgt
ttacctgctcatgtgtgcaaagagataaatagcctggctttaaaaaagctcgatgcgtca
aaaagtgagagcaaggagttgtctatttctgaactctcacgctgctcaggggtgaaagca
gaacgtatagatgaacttgttgctctaagtggttttattgatgtatcgaccactgcggac
ctacatcgtgttccatttgttcttgaactgtgtgaaagtgagtatacgccagatccacaa
caagactgtgaaaaccagtgctttactcaagctattgaaaatattattaaaactttgcca
attaagttgcagaaagtcttgatccatcgattcggattatttgaccagagagtgaaaacc
ttgtcggaaataggcctgttattaaacgtgtctaacgagcgtgttcgtcagatgcagata
gaggcggttgaacgcgtgcagaaacgtctccgattcgatggttgggtttaa
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