Vibrio neptunius: KW548_00680
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Entry
KW548_00680 CDS
T08906
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vnp
Vibrio neptunius
Pathway
vnp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vnp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KW548_00680 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vnp03021
]
KW548_00680 (rpoC)
03400 DNA repair and recombination proteins [BR:
vnp03400
]
KW548_00680 (rpoC)
Enzymes [BR:
vnp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KW548_00680 (rpoC)
Transcription machinery [BR:
vnp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KW548_00680 (rpoC)
DNA repair and recombination proteins [BR:
vnp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KW548_00680 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QXX06710
LinkDB
All DBs
Position
1:complement(142258..146463)
Genome browser
AA seq
1401 aa
AA seq
DB search
MKDLLNFLKAQHKTEEFDAIKIGLSSPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLMDIPLRDIERVLYFEMYVVTEPGMTDLEKSQMLTEEEYLDRLEEWGDEFTAKM
GAEAIKDLLASMDLPAEIEEMREELQSTNSETKRKKITKRLKLVEAFVQSGNNPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAIVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTRDKINVKGEGMYLASPAEAEKAYRTK
SAELHARVKVRITETVKDEDGNSTTETKLVDTTIGRAMLWQIVPDGLPYSIVNQKLGKKQ
ISHLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIEEAEAE
VREIQEQYQSGLVTAGERYNKVIDIWASTNDRVAKLMMENLSSEAVVNRDGEEEQQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVHEHDCGTHEGVDMMPHIEGGDVKVALSELAL
GRVVAEDVLKPGTEDVLIPRNTLIDEKWCQIMEENSVDRMKVRSVVTCDADFGCCAQCYG
RDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKTTGTVKL
HNAKFVINKDKKLVITSRASELTIIDEFGRTKEKHKLPYGSLLSKGDNDAVEAGETVANW
EAHTMPIITEVAGRIQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAGKDMRPAIKL
VDAAGNDVMIPGTEMPAHYFLPGKAIVNIEDGAEVGVGDTLSRIPQKSGGNKDITGGLPR
VADLFEARKPKEPAILAEHTGTVSFGKETKGKRRLVITREGGDAYEEMIPKHRQLNVFEG
EKVERGDVIADGPESPHDILRLRGIHAVTQYIANEVQEVYRLQGVKINDKHIETIVRQML
RKCTITHAGDSTEFLVGEQVEYANVKIANRQLEAEGKELVRFERELLGITKASLATESFI
SAASFQETTRVLTEAAVSGKRDELRGLKENVIVGRLIPAGTGFAYHQDRQAKRVEEQEGP
SAEQATDNLAALLNAGFSSEE
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaactttctaaaagcgcagcataagaccgaagaatttgatgcaatc
aaaatcggtctatcttcaccagacatgatccgttcatggtctttcggtgaagttaaaaaa
cctgaaacgatcaactatcgtacgttcaagcctgaacgtgatggtctgttctgtgcgcgt
atttttggtccagtaaaagactacgaatgtctttgtggtaaatataagcgtctgaaacac
cgtggtgttatctgtgagaagtgtggcgttgaagttacacaaactaaagttcgtcgtgac
cgcatgggccacatcgagcttgcttcaccagttgctcacatctggttcctaaaatcattg
ccgtctcgtatcggtctactcatggatatccctctacgtgatatcgagcgtgttctttac
ttcgaaatgtacgtagtaactgaaccgggtatgactgacctagaaaaatctcagatgcta
actgaagaagagtatctggatcgtctagaagaatggggtgatgagttcacggctaagatg
ggtgcggaagcgatcaaagacctacttgcgtctatggatctgcctgctgaaatcgaagaa
atgcgtgaagagcttcagtctactaactcagagactaagcgtaagaagatcactaagcgt
ctgaagcttgttgaagcgttcgttcaatctggtaacaacccagagtggatgatccttact
gtgcttccggtacttccgccagatctacgtcctctagttccactagacggcggtcgcttc
gcgacttctgatctgaacgacctataccgccgtgtaatcaaccgtaacaaccgtttgaag
cgtctactagagcttgctgctccggacatcatcgtacgtaacgaaaagcgtatgctacaa
gagtctgttgatgcacttctagataacggtcgtcgcggtcgcgcgatcacgggttcgaac
aagcgccctcttaaatctcttgctgatatgatcaagggtaaacaaggtcgtttccgtcag
aaccttctaggtaagcgtgtagactactctggccgttctgtaatcacagtaggtccatac
cttcgtctacaccagtgtggtcttcctaagaagatggcacttgagctattcaaaccattc
atctacagcaagctagagactcgtggtcttgcgacgacaatcaaagctgctaagaagatg
gtagagcgcgaagaagcgatcgtttgggatatcctggacgaagtcatccgcgaacaccca
gtactattgaaccgtgcacctacacttcaccgtctaggtatccaggcgttcgaaccagta
ctaatcgaaggtaaagcgattcagctgcacccactagtgtgtgcggcgtacaacgcggac
ttcgatggtgaccaaatggcggttcacgtgcctctaactctagaagcacagcttgaagct
cgtactctgatgatgtcgacaaacaacattctgtcgccagcgtcaggtgatccgatcatc
gtaccttctcaggacgttgtattgggtctttactacatgactcgtgacaagatcaacgtg
aaaggcgaaggtatgtaccttgctagcccagctgaagctgagaaagcatatcgtactaag
tctgcagagctgcatgctcgcgttaaagttcgtatcactgagactgtaaaagacgaagat
ggcaacagcacaactgagactaagctggttgataccactatcggtcgtgcaatgctatgg
caaatcgtgcctgatggccttccgtacagcatcgttaaccaaaagctgggtaagaagcaa
atctctcacctacttaacgaggcttaccgtaagctaggtctaaaagacactgtcatcttc
gctgaccaaatcatgtacacaggtttcgcttacgcggcactttctggtgtatctgttggt
atcgacgacatggttgttccagcagctaagtacactgagatcgaagaagcggaagcagaa
gttcgcgaaatccaagaacagtaccaatctggtcttgtaacagcgggcgagcgctacaat
aaagtgatcgatatttgggcatcgaccaacgatcgcgtagcgaagttgatgatggaaaac
ctctcttctgaagctgttgttaaccgcgacggtgaagaagagcagcaagaatcgttcaat
agcatctacatgatggccgactcgggcgcacgtggttctgcggctcagattcgtcagctt
gcaggtatgcgtggtctgatggcccgtccagatggttcaatcatcgaaacgccgatcact
gcgaactttaaagaaggtctaaacgtacttcagtactttatctcaacgcacggtgctcgt
aagggtcttgcggatacagcactgaaaacagcgaactcgggttacctaactcgtcgtcta
gtagacgttgctcaagacgttgttgtacacgagcatgactgtggcacccatgaaggtgtt
gacatgatgccgcacatcgaaggtggtgacgttaaagttgcactttctgagctggctctt
ggtcgtgtagttgcagaagacgtactgaagccaggtactgaagatgtactgatcccacgt
aacactctaattgatgagaagtggtgtcagatcatggaagagaactcagttgaccgcatg
aaagtgcgctctgtagttacctgtgatgcagacttcggttgttgtgctcagtgttacggt
cgtgacctagcacgtggtcacctagtgaaccaaggtgaagcagtgggcgttatcgctgct
cagtctatcggtgagccgggtacacagcttacgatgcgtacgttccacatcggtggtgcg
gcatctactgcagcagcagagaacagcatccaagctaagacgactggtacagttaagcta
cacaacgctaaattcgttatcaacaaagataagaagcttgtcatcacttctcgtgcttca
gagctgactatcattgacgaatttggtcgtactaaagagaaacacaaactaccttacggt
tctctactatctaaaggcgacaacgacgcagttgaagctggtgaaacagtagcgaactgg
gaagcgcacactatgccaatcatcactgaagtggcaggtcgcatccagtttgtggacatg
atcgatggcgtgacagtttctcgtcaaacagatgatctaacaggtctatcttcaagcgaa
gtaactgaagcagcagctcgcccagcagcaggtaaagatatgcgtccagctatcaaactt
gttgatgcggcaggtaacgacgtaatgatccctggtactgaaatgccagctcactacttc
ctacctggtaaagcgattgtaaacatcgaagatggcgctgaagtaggcgtgggtgatact
ctatctcgtatccctcagaaatctggcggtaacaaagatatcaccggtggtctaccacgc
gtagctgacctattcgaagctcgtaagccgaaagagcctgcgattcttgctgagcacaca
ggtactgtaagcttcggtaaagaaacgaaaggtaagcgtcgtctagtcatcactcgtgaa
ggcggcgacgcatacgaagagatgattcctaagcatcgtcagcttaacgtattcgaaggc
gagaaagttgaacgtggtgacgtgatcgcagatggtccagagtctccacatgacattcta
cgtctacgtggtatccacgctgtgactcaatacatcgcgaacgaagttcaagaagtatac
cgtctacaaggcgttaagattaacgataagcacatcgaaactatcgttcgtcagatgcta
cgtaagtgtacaatcacacacgctggtgactctacagagttcctagtgggtgagcaggtt
gaatacgcgaacgttaagattgctaaccgtcagctagaagctgaaggcaaagagctagtt
cgtttcgagcgtgagctacttggtattactaaggcatctctagcgaccgaatcgttcatc
tctgcggcatcgttccaggaaacaactcgcgtactaacagaagctgcggtttctggtaag
cgtgatgagctacgtggtctgaaagaaaacgtaattgttggtcgtctaatcccagcaggt
acaggtttcgcttaccaccaagatcgtcaagctaagcgtgtagaagagcaagaaggtcct
tccgctgaacaagcgactgacaaccttgcagcgctactaaacgcaggcttttcttcagaa
gaataa
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integrated database retrieval system
