Vibrio neptunius: KW548_03455
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Entry
KW548_03455 CDS
T08906
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
vnp
Vibrio neptunius
Pathway
vnp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vnp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KW548_03455 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vnp03019
]
KW548_03455 (rnr)
03016 Transfer RNA biogenesis [BR:
vnp03016
]
KW548_03455 (rnr)
Enzymes [BR:
vnp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KW548_03455 (rnr)
Messenger RNA biogenesis [BR:
vnp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KW548_03455 (rnr)
Transfer RNA biogenesis [BR:
vnp03016
]
Prokaryotic type
tRNA degradation factors
KW548_03455 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
RNase_II_C_S1
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
QXX07139
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All DBs
Position
1:722136..724601
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AA seq
821 aa
AA seq
DB search
MSENTTNDPFAARESENYENPIPSREFILEFLEQAGVPLNRNDLFEALHLEGEEQYEGLR
RRLRAMERDGQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWVRPEGSVGKDNDVVLPHH
QMKSVLHGDYVLVQPTQNSKRGRKEGRLVRVLEERQTQIVGRFFMEYGYSYVVPDDSRIS
QDILIPNDLRAGARMGNVVVIEITDRGSRSRGMMGKVIEVLGENMAPGMETQIAIRTHQI
PHEWPEAVDKQIEGLGEDVPEEAKVGRVDLRELPLVTIDGEDARDFDDAVFCEKKKSGGW
RLWVAIADVSYYVRPDSALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCM
VCEMTISETGKLSGYKHYEAVMNSHARLTYNKVHHILEGDEELRQRYEPLVPHLEELHKM
YKVLKHARDNRGAIEFETVETKFIFNAERKIDSIEPVIRNDAHKIIEECMILANIASASL
VEKAKEPALYRIHESPGELRLQGFRDFLGELGLHLNGGLEPSPTDYADLVKQIGERQDKE
LIQTMLLRSMKQAVYNADNCGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKENGTL
KDRWTPTGGCHYSFDDMDFYGEQCSMTERRADDATREVSDWLKCEYMQDHVGEELEGVIA
NVTGFGFFVRLTELHIDGLVHISALANDYYQFDPIGQRLIGETFGAIYRLGDAVKVKVLS
VNLDDRQIDFELVETSRKLRGKGKTAKKRAAEAQKKAKAKKNAAANGRRSADKAKPMVEP
TKRPDGSQEEGKGSKTSKKPSEKARKKKPRHKAKKARGKKQ
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaaacaccacaaacgatccttttgccgctcgtgagtcagagaactacgaaaac
ccaattcccagtcgggagttcattcttgaatttcttgagcaggctggcgttcctttaaat
cgcaacgatctttttgaagcgcttcatttagaaggtgaagagcaatatgaaggcttacgc
cgtagattaagagcgatggaacgtgatggtcaactggtgtttacccgccgtcaatgctac
gccttgccagaaaaactcgaaatggtgaaaggttacgttatcggacacaaagatggtcat
ggctgggtgcggcctgaagggagtgtgggcaaagataacgatgtggtattgcctcatcac
cagatgaaaagtgttttgcatggcgactatgtgttagtccagccaacacagaactccaag
cgaggaagaaaagaaggtcgtttggttcgcgtgcttgaagagcgtcagacgcaaattgtg
ggtcgattctttatggagtacggctattcctatgttgtgcccgatgattcgcgtattagc
caagacatcctgatcccgaatgacttacgtgcaggagcgcgtatgggtaacgtcgtggtg
attgaaattaccgatcgtggctctcgctctcgtggcatgatgggcaaagtgattgaagtt
ctgggtgaaaatatggccccggggatggagacacaaattgctatccgtactcaccaaatt
ccgcatgagtggcctgaagcggtcgataagcaaatagaagggcttggtgaagacgtaccg
gaagaggcaaaagtcggtagggtagacctacgcgaactgccactcgtgactatcgatggc
gaagatgctcgcgactttgacgatgctgttttctgtgagaaaaagaaaagcggtggttgg
aggctttgggtcgctattgccgatgtcagctattacgttcgtccagacagtgcactggat
aaagaagcgattaaccgcggtaactcggtttacttcccatcgcaagtcgttccaatgctt
ccggaggtattgtctaacggcttatgttctctcaacccgcaagttgatcgcctatgtatg
gtgtgtgagatgaccatctctgagacgggtaagttatctggctataagcactacgaagcg
gtgatgaactcccatgctcgcctgacttacaacaaggtacaccatatccttgaaggagat
gaggagctgcgccaaagatacgaaccactcgttcctcacttagaagagctccataagatg
tacaaagtgcttaagcatgctcgtgacaatcgtggtgcgattgaatttgaaacggtggaa
accaagttcatcttcaatgcggagcgtaagattgacagtattgaacctgtgattcgcaac
gatgcgcataagattattgaagagtgtatgatcttagccaatatcgcttctgcttctttg
gtcgaaaaagcaaaggaaccggcactctaccgaattcacgaatctccgggtgagctacgt
ctgcaaggtttccgagacttcttaggtgagctaggtctgcacttaaatggtggtttagaa
ccatcgccaaccgattacgctgacttagttaagcaaattggcgagcgtcaagacaaagaa
ctgattcaaaccatgttattacgttcgatgaagcaggcggtctataacgcagataactgc
ggccactttggcttggcactaaaacgctacgcgcactttacctcgcctattcgtcgctac
ccagacttgctattgcatcgcgcgatcaaatatctaattgccaaagagaatggcacattg
aaagatcgctggacaccgacaggtggttgccactattcatttgatgacatggacttctat
ggtgagcaatgttcgatgactgagcgtcgtgccgatgacgcgactcgtgaagtctctgac
tggctcaaatgtgagtacatgcaagatcacgttggtgaagagctggaaggtgtgattgct
aatgtgactggctttggtttctttgtccgtctaactgaattgcatattgacggactagtg
catatttctgctttggcaaacgactactaccagtttgatccgattggacagcgactaatt
ggtgaaactttcggcgctatctatcgccttggtgatgcagtgaaagtgaaagtgctgtct
gtaaatctagatgatcgacaaattgactttgaattagtcgaaactagtcgtaagctacgc
ggcaaaggaaaaacagccaaaaaacgtgcagccgaggcacagaaaaaagctaaggccaaa
aaaaatgcggcagcgaatggtcgtcgttccgcagataaagcgaagcctatggttgaacca
acaaaacgcccggatggcagtcaggaagaaggcaaaggcagtaaaacctcgaagaaacct
tcagaaaaagcgcgtaagaaaaagccacgtcacaaagcaaagaaagcgcgtggtaaaaaa
cagtaa
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