Vibrio neptunius: KW548_05460
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Entry
KW548_05460 CDS
T08906
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vnp
Vibrio neptunius
Pathway
vnp03030
DNA replication
vnp03430
Mismatch repair
vnp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vnp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KW548_05460 (dnaE)
03430 Mismatch repair
KW548_05460 (dnaE)
03440 Homologous recombination
KW548_05460 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vnp03032
]
KW548_05460 (dnaE)
03400 DNA repair and recombination proteins [BR:
vnp03400
]
KW548_05460 (dnaE)
Enzymes [BR:
vnp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
KW548_05460 (dnaE)
DNA replication proteins [BR:
vnp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
KW548_05460 (dnaE)
DNA repair and recombination proteins [BR:
vnp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
KW548_05460 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
QXX07461
LinkDB
All DBs
Position
1:1146286..1149765
Genome browser
AA seq
1159 aa
AA seq
DB search
MSDPKFIHLKVHSDFSMVDGLSKVPPLVKKVAEMGMPAMALTDFTNLCGLVKFYGTAHGC
GVKPIIGADFAMQSEEFGEELTKLTVLAADNEGYKNLTLLISKAYLRGHVQHQPVIDKQW
LAELSAGLIVLSGAKSGEIGKALLKGNHKVAQNCADFYHQHFADRFFLELTRTGRADEET
YLHFALDFAEKEQLPVVATNDVVILDETTFEAHEIRVAIHDGYTLEDPRRPKNYSAQQYL
RSEEEMCELFADIPEALENSVEIAKRCNVTVRLGEYFLPAFPTEGMEETEFLVKKSEEGL
EERLEFLFPDAEERAKRRPEYDDRLKIELEVINNMGFPGYFLIVMEFIQWSKDNDIPVGP
GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPFGFVDRISKLVPPDPGMTLEKAFKAEPA
LPELYEADEEVKELIDMCRILEGCTRNAGKHAGGVVISPTTITDFAPIYADSEGHFPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEREGKDPVRIESIPLDDAASFRLL
QNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREA
ISYPDEKWQHESLKEILDPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRATFEDGAVKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKMHYPA
EFMAAVMTADMDNTEKVVGLVDECFRMKLKVLPPDINAGLYRFNVDENGAIVYGIGAIKG
VGEGPIEAILEARNKGGHFKDLFDFCARIDLKKVNKRVIEKLIYAGALDRLGPHRAAMMA
SLNDAVKAASQYHQAEAFGQSDLFGVLTEAPEEVEHKYTKVPAWPEKVWLEGERDTLGLY
LTGHPINAYIKELGKYTSCRLKDATPTRRDQSVTVAGLVIAARVMTTKRGTRIGIMTLDD
RSGRMEVMLFSDALDRYAELLEQDKILVVSGQVSFDDFNGGLKMSAREVMDLGTAREKYA
RGLSVSIEQSQIDDQFFERFSKILEPYKAGTVPVHIYYQRSDARARLTLGTEWRVTPSDE
LIDNLKQLLGMSQVELEFN
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatcctaaatttattcacctaaaagttcacagtgacttttccatggtcgatggc
ctatcgaaagtgcctcctttggttaagaaagtggctgaaatgggaatgccagctatggca
ttaactgatttcaccaacttatgtgggttggtgaagttttatggaacggctcatgggtgt
ggcgtgaagccaattattggcgctgattttgcgatgcagtcagaagagtttggtgaagag
ttaactaaactcactgttctggcagcagacaatgaggggtataaaaacttaaccttgctg
atctccaaagcgtatctacgtggtcatgttcaacatcaacctgtcattgataagcaatgg
ctagctgagctgtcggcagggcttattgttctatcaggggcaaaaagtggagagattggt
aaagcgttactgaaggggaaccataaagttgctcaaaactgcgctgatttttatcatcaa
cactttgccgaccgatttttccttgaactgacgcgtaccgggcgagcagatgaagaaact
tatcttcactttgccttggactttgcagagaaagagcagctgcctgttgtcgccactaac
gacgtcgtgattctagatgaaacgacgttcgaggcacatgagattcgtgtggcaattcat
gacggttacacgctagaagatcctcgccgccctaaaaactacagtgctcagcaatattta
cgtagcgaagaagagatgtgcgagctgttcgccgatatccctgaagcgctggaaaatagt
gttgaaattgctaagcgttgtaatgtgacggtacgtttgggtgagtacttcctgccggca
ttcccgacagaggggatggaggaaaccgaatttctggtcaaaaaatcagaagaaggcctc
gaagagcgcttagagtttctgtttccggatgcagaagagcgagctaagcgacgtcctgaa
tacgacgaccgtttgaaaatcgagctggaagtgattaacaatatgggcttccccggttac
ttcctgatcgtaatggagttcattcagtggtcgaaggataatgatatccctgttggacca
gggcgcggttcgggtgcaggttcgttggtggcttatgcattgaaaattaccgaccttgac
ccgttggaatacgatctgcttttcgagcgattccttaaccccgaacgtgtatccatgccc
gatttcgatgtcgacttctgtatggataaacgagatcaggtgattgatcacgtagcagag
atgtacggtcgtgatgcggtttcccagatcatcactttcggtactatggcggcgaaagcg
gtaatccgcgacgtaggccgtgtactaggccacccgtttggtttcgttgatcgtatttca
aagctggtcccgcctgatcctggtatgacactggagaaagcgtttaaagccgagcctgcg
ttacctgaactgtacgaagctgacgaagaagtgaaagagcttatcgatatgtgtcgcatc
cttgaagggtgtacacgtaacgccggtaagcacgcgggtggtgttgtaatctcgccaacc
accattactgacttcgcgccgatttatgctgactctgaaggtcacttcccggttactcag
ttcgataagaacgacgtagaaactgctggtttggtcaagtttgacttcttaggtctacgt
actctaaccatcatcgactgggctcttggtttgattaacccacgtcttgagcgtgaaggc
aaagatcccgttcgcatcgaatcgattccactggatgatgcggcatcgttccgattgtta
caaaactcggaaacgaccgcggtattccagctcgaatcgcgcggtatgaaagaactgata
aaacgactgcaaccggactgttttgaagacatcatcgcattggtggcgctgttccgccct
ggtcctctacagtcgggcatggtagataactttatcgaccgtaagcatggtcgagaagcg
atctcgtacccagatgaaaagtggcaacatgaatcgctaaaagaaatcctcgatccgact
tacggcattatcctctatcaggagcaggtaatgcagatcgcacaggtattgtctggctac
acccttggtggcgcggacatgcttcgtcgtgcgatgggtaagaaaaagccggaagaaatg
gccaagcagcgtgcgaccttcgaagatggtgcggtaaagaacggcgtcgacggcgagttg
gcgatgaaaatcttcgacttggtagaaaagttcgctggctacggcttcaacaaatcacac
tcagccgcttatgcattggtgtcttaccaaacgctgtggctgaagatgcattacccagcc
gagttcatggctgccgtaatgaccgccgatatggacaacaccgaaaaagtggtcggtctg
gtagacgaatgtttccgtatgaagctcaaggtgcttccgccagatatcaacgctggcttg
taccgttttaacgtcgatgaaaatggtgcgatcgtatacggtattggtgcgataaagggg
gttggtgaaggtcctattgaagctattctagaagcgcgcaataaaggtggtcactttaaa
gacttgttcgacttctgtgctcgtattgatcttaagaaagtgaacaagcgcgtgatagag
aagctcatttatgcaggagcgcttgaccgacttggcccgcaccgtgcagcgatgatggca
tcgcttaatgatgcggtcaaagctgccagccaataccaccaagcggaagcgtttggtcaa
agcgacttgtttggtgttctgaccgaagcgcctgaagaagttgaacacaaatacaccaag
gtacccgcgtggccagaaaaagtttggctggaaggagaacgtgatacacttggcttatat
ttgaccgggcacccaataaatgcctacataaaggaacttggtaagtacaccagttgtcga
ctaaaagatgcgacaccaacgagacgtgatcagagtgtcacggttgcaggtctggtgatt
gcggctcgagtaatgacaaccaagcgcggtactcgtattggtatcatgaccttggatgac
cgtagcggccgtatggaagtcatgttgttctccgatgcgcttgatcgctacgctgaattg
ctcgaacaagacaaaattttggtcgtttctggacaggtcagctttgatgatttcaatggt
ggtcttaaaatgtccgcgcgcgaggttatggatctcggcacggcgcgtgaaaaatatgcc
cgtggcttatcggtgtccattgaacaatctcaaatcgatgatcaattttttgagcgcttt
agtaagatactagagccttacaaggcaggaacggttcctgtccatatatactaccaacgc
agtgacgcgcgagcgcgcttaacgttaggtaccgaatggcgtgtgacgcctagtgacgaa
ttaatagacaatttgaaacaactgcttggtatgagccaggtagaactcgaatttaactaa
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