Vibrio neptunius: KW548_07420
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Entry
KW548_07420 CDS
T08906
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
vnp
Vibrio neptunius
Brite
KEGG Orthology (KO) [BR:
vnp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vnp03032
]
KW548_07420 (topA)
03400 DNA repair and recombination proteins [BR:
vnp03400
]
KW548_07420 (topA)
Enzymes [BR:
vnp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
KW548_07420 (topA)
DNA replication proteins [BR:
vnp03032
]
Prokaryotic type
DNA Topoisomerases
KW548_07420 (topA)
DNA repair and recombination proteins [BR:
vnp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
KW548_07420 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Topo_Zn_Ribbon
TOP1_ZnF
Toprim
zf-C4_Topoisom
Toprim_2
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QXX07779
LinkDB
All DBs
Position
1:1531038..1533665
Genome browser
AA seq
875 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGKDFIVKSSVGHVRDLPTAGQSTGQKAAAVSTKGLSVEE
KARIKKEKDRKALIKKMGIDPFNGWEANYQVLPGKEKVVAELQKLAKDADRVYLATDLDR
EGEAIAWHLREIIGGDEERYKRVVFNEITKNAIQQAFQKPGELSMDGVNAQQARRFMDRV
VGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREIKAFVPEEFWDIHADTKTADKTDF
RLQVAQKDGVSFKPSNEAETQSAIAVLEKAAYEVCKREDRPTSSKPSAPFITSTLQQAAS
TRLGYGVKKTMMLAQRLYEAGYITYMRTDSTNLSAEAVETVRGFIGDEYGDAYLPAKPNV
YGSKEGAQEAHEAIRPSDVAVKADDLKGMEADAHKLYSLIWNQFVACQMTPAKYDSTTVS
VKAAEYTLKAKGRILKFDGWTRVQRPLGKNEDQILPAVQVGDKVDLIHLDPKQHFTKPPA
RFTEAALVKELEKRGIGRPSTYASIISTIQDRGYVKVEQRRFYAEKMGEIVTDRLDDSFH
ELMNYEFTSRMEEKLDQIAEGEANWKKVLDNFFGDFTGDLEKAEQDEDLGGMKPNHIVYT
DIECPTCSREMGIRTASTGVFLGCSGYALSPKERCKTTINLGDEEGIINVLEEDVETAAL
RAKKRCPICETAMDAYLIDDKRKLHVCGNNPNCDGYIVEHGEYKVKGYDGPVVECDKCGS
DMVLKNGRFGKYMDCTSETCKNTRKILKNGEVAPPKEDPVHLPELPCENSDAYFVLRDGA
SGLFLAASTFPKSRETRAPLVEELVRFKDRISPKFHYLTTAPEKDPDGLPMVVRFSRKSK
ENYVRSEVDGKPSGYTALYIDGKWEVTDKRKKAAK
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgggtaagtcactcgttattgtggagtcgccagccaaggctaaaaccatcaataagtat
ttaggtaaggactttatcgttaagtccagtgtgggtcacgttcgcgatctgcctaccgca
ggtcagagtactggccagaaagccgcagctgtctctacgaaaggtttgagtgttgaagaa
aaagctcgaatcaaaaaagaaaaagaccgtaaagcgctgatcaaaaaaatgggtatcgac
ccgtttaacgggtgggaagctaactatcaggtcttacctggtaaagaaaaagttgttgct
gagctacagaagcttgcgaaagatgcagaccgtgtctacctcgcaaccgatttggatcgc
gagggagaagctatcgcatggcaccttcgtgagatcatcggtggcgatgaagagcgatac
aaacgagttgtctttaacgaaattactaagaatgcgattcaacaggctttccagaaaccg
ggagagctcagtatggatggcgttaacgctcaacaggcacgccgttttatggatcgtgtt
gtgggctttatggtctcaccactgttgtggaaaaaggtcgcgcgtggtctgtctgctggc
cgtgtacaatctgttgcggtaaaactattggttgagcgcgagcgcgaaatcaaagcgttt
gttccagaagagttttgggacatccacgcggacactaaaaccgctgacaagaccgatttc
cgtctgcaggttgctcagaaagatggtgtgtcgtttaagccgtctaatgaagctgaaacg
cagtcagcgattgctgtactggaaaaagcagcgtacgaagtatgtaaacgtgaagaccgc
ccaacgtcgagcaagccttctgctcctttcattacttcgacacttcagcaagcagccagc
actcgtttaggttacggcgttaagaaaacaatgatgttagctcagcgtctgtatgaagcg
ggttacatcacttacatgcgtaccgactcaacgaatttgagcgcagaagctgtagaaacc
gttcgtggattcattggcgatgagtacggtgacgcttaccttccggctaaacctaatgtg
tatggcagcaaagaaggtgcacaggaagcgcacgaagcaatccgaccttcagatgtggca
gttaaagctgacgatctgaaaggcatggaagcggatgcgcataaactgtattcactgatc
tggaatcagtttgtcgcgtgtcagatgacacctgcaaagtatgattctacgacagtgagc
gtcaaagctgctgagtacacgcttaaggccaaaggccgcattcttaagtttgatggttgg
actcgtgttcagcgtccactaggtaagaatgaagaccagatcctgcccgctgttcaggta
ggtgacaaggttgatttgattcacttagatcctaaacagcactttactaagccaccggcg
cgctttacagaagcggcgttagttaaagagcttgagaagagaggcattggccgtccgtca
acgtatgcgtctatcatttcgaccattcaggatcgtgggtacgtgaaagttgaacaacgt
cgattctacgctgaaaaaatgggtgaaatcgtaacggatcgcttagatgatagcttccat
gagttgatgaactatgagtttacgtctcgcatggaagaaaagcttgaccaaattgctgaa
ggtgaagcgaactggaagaaggtgctagataacttctttggtgactttaccggtgatctg
gaaaaagcggagcaagatgaagaccttggtggcatgaagccaaaccatatcgtctacacc
gatatcgagtgtccaacttgttctcgtgaaatgggtatccgaacagcatcgacaggtgta
ttccttggatgttcaggttatgcactttcgccaaaagagcgttgtaagaccaccattaat
ttgggtgacgaagaaggcatcattaacgttttagaagaagacgttgaaacagcagcactt
cgtgcgaaaaagcgttgtccgatttgtgaaactgcaatggacgcttacctgatcgacgat
aagcgtaagctacacgtgtgtggtaataaccctaattgtgatggttacatcgttgagcat
ggcgagtacaaggtgaaagggtacgacggccctgttgttgagtgtgacaagtgtggcagt
gacatggttctaaagaacggtcgctttggtaaatacatggattgcactagcgagacatgt
aagaacacgcgtaagatcttgaaaaacggcgaagtcgcgccgcctaaagaagatcccgtt
catcttcctgagttaccatgtgaaaactcagacgcctactttgtattgcgtgatggtgct
tcaggtctgtttttagccgcaagtactttccctaaatcacgtgagactcgtgctcctctt
gtcgaagagttagttcgttttaaagaccgtatttctccgaaattccactatctcacgacg
gcgcctgaaaaagatccagatggtcttcctatggtagtgcgtttcagccgtaaatcgaaa
gagaactatgttcgttctgaggttgatggtaagccatcgggttatactgcgctttacatt
gatggcaagtgggaagtgaccgacaagcgtaaaaaagccgcgaaataa
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