Vibrio neptunius: KW548_12500
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Entry
KW548_12500 CDS
T08906
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
vnp
Vibrio neptunius
Brite
KEGG Orthology (KO) [BR:
vnp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vnp03019
]
KW548_12500 (hrpA)
Enzymes [BR:
vnp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KW548_12500 (hrpA)
Messenger RNA biogenesis [BR:
vnp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KW548_12500 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_19
HA2_N
AAA_22
ResIII
nSTAND3
T2SSE
ABC_tran
NACHT
SLFN-g3_helicase
AAA_23
PhoH
AAA_30
TsaE
NTPase_1
Helicase_RecD
Zeta_toxin
OPA3
AAA_7
Motif
Other DBs
NCBI-ProteinID:
QXX05958
LinkDB
All DBs
Position
1:complement(2631436..2635365)
Genome browser
AA seq
1309 aa
AA seq
DB search
MTSSQPEKNPVAEDKTQANNAASLRKALNQCMLKDRFRLSKRISGASKIKKEASRHAVFD
EIALDIAKSMMDVEQRASYKPTIEYPEILPVSQKRDDIAQAIENNQVVIVAGETGSGKTT
QLPKICAELGRGQYGLIGHTQPRRLAARSVANRIAEEMETKLGEFVGYKVRFNDQISDNT
QIKLMTDGILLAEIQHDRFLNQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIIT
SATIDPERFSKHFSDAPIIEVSGRTYPVETRYRPLRGDDDVDRDQLEGIFEAVDELCDEG
LGDILIFMNGEREIRDTADALAKRNLKSTEIVPLYARLSAGEQNKIFQPHAGRRIVLATN
VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPVSQASANQRKGRCGRVEEGICI
RLYSEEDFESRPEFTDPEILRTNLASVILQMTALGLGDIQAFPFVEAPDKRNIQDGVRLL
EELGAINENAKDPKKRLTSIGRQLARLPIDPRLARMVLEAPKYGALKEVMVIASALSIQD
PRERPSDKQQSSDDKHKRFFHEESDFLTFVNLWDYVQKQQKALTGNQFRKQCKQDYLNYL
RVREWQDVYFQIHQSMREMDFKLNDEPASYQGTHSAILVGLLSHVGMKDQEKNEYQGARN
ARFHIFPASGLFKKQPKWIVSAELVETSKLWGRIIAKVQPEWVEPLAKHLIKRSYSEPHW
SKKRAAVMAHEKVMLYGIPIVPKRLVNYGSIDATVSREIFIRSALVEGEWDTKHAFFKQN
RKLLQEVEELEHKSRRRDILVDDDELADFYDQRVGTEVVSGRHFDTWWKKASKENSELLN
FEKEMLFKGDASHVTDLDYPNFWHQNGLKLKLSYQFEPGEDNDGVTVHLPLPILNQVEQA
GFDWQIPGLRHELVVSLIKSLPKTIRKNFVPAPNYADAFLARATPMEAPLLDALEKELRR
MTGVEVLRDDWNLDQVQDHLKVTFRAVDHRNRKLKENRDLHELKESLKDKVQETLSKVAD
DDIEQQGLHTWSFGELPKVYQQKRGGYDVKAYPAIVDSKDSVEIKLYETEQEQVSAMKAG
QRRLVLLNVPSPIKYLHSNLPNKSKLGLYFNPYGKVLDLIDDCIACGVDKLIEEKGGLVW
QPEQFEQLKEHVRAELGDTVVDIAKQVETILTTAFSINKKLKGKIDFTMAFALSDIKAQI
EGLIFKGFATECGWKRLPDILRYMKAIERRMEKLPIDPNKDRLHMLKIESVANDYKELLN
KIPKGMAVPDDVKEVRWMLEELRVSYFAQQLGTPYPVSDKRVKNAIDDC
NT seq
3930 nt
NT seq
+upstream
nt +downstream
nt
ttgacttcgtcacagccagaaaaaaatcccgtcgccgaagataaaacgcaggctaacaac
gccgcctctcttcgcaaggcattgaatcagtgtatgctcaaggaccgatttcgtttgagc
aagcgtatttcgggcgcgagcaaaatcaagaaagaagcgtcccgtcatgcggtatttgat
gagattgcactcgatattgccaagtccatgatggatgtagaacaaagagccagttataaa
cccaccattgaatatccagaaatactgcctgttagtcagaaaagagatgacattgcacag
gcgatagaaaacaaccaagtggttatcgttgctggtgagactggctcaggtaaaacgact
caactgccaaagatctgtgctgaactcggacgtggtcagtatggcttgattggtcatact
cagccaagacgtcttgcagcacgttcggtggcgaatcgtatcgctgaagagatggaaacc
aaactgggtgaatttgttggttataaggttcgatttaacgatcagatctcagacaatacc
caaattaaactgatgactgacggtatcttgctggctgaaattcagcacgatcgcttctta
aatcagtacgacaccatcattattgatgaagcgcatgagcgcagcctcaacatcgatttc
attctcggttacctcaaagagcttttgccgcgtcgccccgatctgaaagtgatcatcact
tctgcgaccattgaccccgagcgattctcgaaacactttagcgacgcgcctatcatcgaa
gtgtctggccgtacttatccggtggaaacacgttaccgcccgctacgtggtgacgatgac
gtcgatcgcgatcagctagaaggtatttttgaagcggtcgatgaactgtgtgatgaaggc
ttgggcgatatcctgatcttcatgaacggtgagcgagaaattcgcgatactgctgacgcg
ctagcaaaacgaaatctcaaaagcactgaaattgtgcccttgtatgcacgcctctcagcg
ggcgagcagaacaaaattttccaacctcatgccgggcggagaatcgtattggcgaccaac
gttgctgaaacctctctgacagtgccgggcatcaagtatgtcatcgacccaggtacagca
cgtatcagtcgctacagctatcgaaccaaggtacaacgtctgccgattgaaccggtttct
caggcgagtgcgaaccagcgtaaaggtcgttgtggtcgtgttgaggaaggtatctgtatt
cgtttgtattcggaagaggattttgaatctcgcccagagtttacggacccagaaattctt
cgtactaacctagcctcggttattctccagatgacagcattaggactgggcgacattcaa
gcgttcccgttcgttgaagcgcccgacaaacgcaatattcaagacggtgtgcgactgttg
gaagagctgggagcgatcaatgaaaatgcgaaagatcctaaaaagcgtctgacgtcgatt
ggtcgccagttggcccgcttaccgattgatccgcgtttagctcgtatggttcttgaagcg
ccaaaatatggcgcattgaaagaagtgatggttattgcttcagcgctgtcgattcaagat
ccaagagagaggccgagcgataagcagcagtcgtcagatgataaacacaagcgcttcttc
catgaagaatcggatttcctgacgtttgttaatttatgggattacgttcagaagcagcaa
aaggcattaacaggcaatcagttccgcaaacaatgtaagcaagattacctaaactatttg
cgagtgcgtgagtggcaggacgtctatttccagattcaccagtctatgcgtgaaatggat
ttcaagctcaatgatgaacctgctagttatcaaggtactcacagcgcgattttggtcggg
ttgctctctcatgttggtatgaaagaccaagagaaaaatgagtaccaaggggcgcgcaac
gcaagattccatattttccctgcatcaggcttgtttaagaaacagccgaaatggattgtg
tcggccgagctggtggaaacttctaagttgtggggacgtataattgccaaggtccaacct
gaatgggttgaaccgctggcgaagcatctcatcaaacgtagttacagtgaaccacactgg
tcgaaaaaacgtgctgccgttatggcacacgaaaaggtgatgctgtatggtattccgatt
gtgcctaagcgtctggtgaattacggcagtattgacgcgacggtgagtcgagaaatcttt
atccgcagtgcccttgttgaaggtgaatgggataccaagcatgccttcttcaaacagaat
cgtaagcttctccaagaagtggaagagctggaacacaagtcccgtcgtcgtgatattttg
gttgacgatgacgagttggcagacttttatgaccaacgagttgggacagaagtagtctca
ggccgccattttgatacttggtggaagaaagcgtccaaagagaacagcgaactactgaac
tttgaaaaagagatgctgtttaagggtgacgcgagccacgttacggatctggattaccct
aacttctggcaccaaaatggcctcaaactgaaactgagttaccagtttgagccgggtgaa
gataatgatggtgtgacggttcacttacctttgcctatactgaatcaggttgaacaagct
ggcttcgactggcaaattccaggactgcgtcatgaactggtcgttagcctgatcaaatcg
ctgccgaagacgattcgtaagaatttcgtacctgcgcctaactatgcagatgcgttttta
gctcgtgcaacgccaatggaagcgcctttacttgacgctttagaaaaagagcttcgtcgg
atgacgggtgtggaagtgttgcgtgacgattggaacctcgatcaggttcaagatcacctt
aaagtgacatttcgtgccgtggaccaccgaaatcgaaagctcaaagaaaaccgcgatctt
catgagctaaaagaaagcttgaaagacaaagtgcaggaaaccctgtcgaaagtggcagat
gatgatatcgagcaacaaggtcttcatacttggagctttggtgagttgccaaaagtgtat
caacagaaacgcggcggctatgacgtgaaagcgtatccggcgattgtcgatagcaaagac
agcgtcgaaataaagctttacgagacagagcaagaacaggtttcagcgatgaaagcgggt
cagcgtcgtttggttttgcttaacgtgccgtctccaataaagtatctacatagcaatttg
ccgaacaagtctaagctgggtctttactttaacccttatggcaaagtactcgacctgatt
gatgactgtatcgcgtgtggtgtcgataagcttattgaagagaagggtgggctagtttgg
cagcctgagcagttcgagcagcttaaagaacacgtgcgtgctgagctcggtgatactgtt
gttgatattgcaaaacaagttgagacaattttgacgactgcgttcagtattaataaaaag
ctaaagggtaagatagatttcaccatggcttttgctttgtcagatatcaaagctcagatt
gaaggactgatcttcaaaggatttgcaacggagtgtggctggaagcgtcttccagatata
ttacgttacatgaaagcgattgagcgtcgtatggagaaattgccgatcgatccgaataag
gatcgtctgcacatgctgaaaattgaatcagtggccaatgactataaagagttactcaac
aaaatcccgaaaggaatggcggtaccagatgacgtcaaagaagtacgctggatgcttgag
gagctgcgcgtgagctattttgctcagcagttaggcacaccatacccagtatcggacaaa
cgcgtgaaaaacgcgattgacgattgctag
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integrated database retrieval system
