Vibrio neptunius: KW548_13725
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Entry
KW548_13725 CDS
T08906
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
vnp
Vibrio neptunius
Pathway
vnp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vnp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KW548_13725 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vnp03019
]
KW548_13725 (rne)
03009 Ribosome biogenesis [BR:
vnp03009
]
KW548_13725 (rne)
Enzymes [BR:
vnp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KW548_13725 (rne)
Messenger RNA biogenesis [BR:
vnp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KW548_13725 (rne)
Ribosome biogenesis [BR:
vnp03009
]
Prokaryotic type
rRNA processing factors
KW548_13725 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QXX06154
LinkDB
All DBs
Position
1:2933407..2936322
Genome browser
AA seq
971 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLYDLDIESPGHESKKANIYKGRITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPEGYTYQGRPSIKEVLTEGQEVIVQVEKEERGSKGAALTTFV
SLAGSYLVLMPNNPRAGGISRRIEGDERTQLKAALSTLELPQGMGLIVRTAGVGKSAEEL
EWDLNVLLNHWGAIKQASEANPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIFERA
LEHIRLVRPDFENRVKKHDREVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RLRDAVRLDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNESLAL
SVLRLIEEEALKDNTAQVLAVVPVPIASYLLNEKRRSINHIERNQEAKITVVPNSDMETP
HFEVIRVREGEEFDLLSYLVPKKLEAMKEAEGKEPVEQEVKAKKIEEPALKGFASPTQSA
PAPAKPVAKKAPEKKAKADTETAQPGLINRIFKALGSFLFGSAKEEEKQEEQKPKERKEG
NRNNRNRRNRNDNRRRGNRDNRNDNRDDKRDNRRDNKRDEAANEAKPNERKQQNRKPKQD
RRNKRDDVKPNKVAEEGLKLAADAQQTDKPEARKERAEEKAAKVKERRQRRKLSKQVRVK
DQAAKAKADEEAKQVATEAKAEAVEEHAVATDVEEAEQPKQRRNRRSPRHLRASGQRRRR
GRDRRPNPFRLRKGGVASPEMAMGKVMPSYGISKPETKHKAKAEQAAAPEVTTSALGGFA
CPEMAMGKVIVRRPASVVEPVVEQTVPLETAQLAETPVTEQVQASIETAQEKTVREAVTA
TEVTVSSDIVVPKAFKGHASAPMAKAPGTTEMKDITVIAAPFREDRYLSKGAGSQVASNK
ASAAMAKPQNF
NT seq
2916 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctaatcaacgcaactcaaaaagaagagttgcgtgttgctttggttgat
ggtcagcgcttatatgatttagatatcgaaagcccaggccacgaatcgaaaaaagcaaac
atctacaaaggacgtatcactcgcatcgaaccaagtctggaagcagcttttgtcgattat
ggtgcagagcgacacggtttccttcctctaaaagaaattgcccgcgaatactttcctgaa
ggttacacttaccaaggtcgcccaagcattaaagaggtgctgactgaaggtcaagaagta
attgttcaagtagagaaagaagaacgtggcagcaaaggtgcagccctcacgacttttgtt
tctcttgcaggtagttaccttgttctgatgccaaataaccctcgtgcaggcggcatttct
cgccgaatcgaaggggatgagcgtacacaactgaaagcggcattgagcacgctagaacta
ccacaaggtatggggcttattgtccgtacggccggtgtaggaaagagcgccgaagaactt
gagtgggacttgaatgtgctcctcaaccactggggcgctatcaaacaagcttctgaagcg
aacccagctcctttccttatccatcaagaaagtaacgttatcgttcgtgctattcgcgat
tacttacgtcgtgatatcggtgaaattctgatcgatagcaatactatctttgaacgcgct
ctggaacacattcgccttgtccgtcctgactttgaaaaccgagtcaaaaaacacgaccgt
gaggtccccctatttagccattaccaaattgaaagtcagattgaatcggctttccaacgt
gaagttcgtctaccttctggtggttcaattgtcatcgacccaacagaagctctgacctct
atcgatatcaactctgcccgtgcaacgaaaggcggcgatatcgaagagacggcattgaac
accaaccttgaagcggccgatgaaattgctcgccaacttcgtctgcgtgatctaggtggc
cttgtcgttatcgactttattgatatgaccccggtacgccatcaacgcgaagttgagaac
cgcctgcgtgacgctgttcgtcttgatcgtgctcgtgttcaaatcggtcgtatctcgcgc
tttggcctgttagaaatgtcgcgtcaacgtttgagtccttctctagctgaagcaagtcac
cacatttgccctcgctgtagcggtactggtgtcgttcgtgataatgaatctcttgccctc
tctgttcttcgtttgatagaagaagaagcactgaaagacaatactgcgcaagttctggct
gtggttcctgtcccgattgcatcttaccttctgaatgaaaagcgtcgttcaatcaaccat
attgaacgtaatcaagaagctaagatcactgtggttcctaactcagatatggaaacgcca
cattttgaagtgattcgagtacgtgaaggtgaagagttcgatctgctttcttacctagtt
cctaaaaagctcgaagcgatgaaggaagcagaaggtaaagagccagtagagcaagaagtc
aaagcgaagaagattgaagagcctgcactaaaaggcttcgcatcaccaacccagtctgca
ccagctccagcgaaacctgtcgctaaaaaagcgcctgagaagaaagcgaaagctgacact
gagacggctcaacctggactcataaaccgcatctttaaagcactaggtagcttcctattt
ggttcagctaaagaagaagagaagcaagaagaacagaagcctaaagagcgcaaagaaggt
aaccgcaacaatcgtaaccgccgtaaccgtaacgacaaccgtcgccgtggtaatcgcgat
aatcgaaacgacaaccgtgacgataagcgcgataacagacgtgataacaagcgtgacgaa
gcagcgaatgaagcgaagcctaatgaacgtaaacagcaaaaccgtaaacctaagcaagat
cgccgtaacaaacgcgatgatgtgaagccaaacaaagttgctgaagaaggtctaaaacta
gcggctgatgctcaacagactgacaaacctgaagcgcgcaaagagcgagcggaagagaaa
gccgctaaagtgaaagaacgccgtcaacgccgcaagctatctaagcaagtacgtgtcaaa
gaccaagctgcaaaagcgaaagcggatgaagaagcgaagcaagtggctactgaagcaaaa
gctgaagcggtagaagagcatgccgtagctacggatgtggaagaggctgaacaaccaaaa
caacgccgtaatcgccgctctccacgtcatctgcgtgcgagcggtcagcgccgtcgtcgt
ggtcgcgatcgtcgtcctaacccattccgcttacgcaaaggtggcgttgcttcacctgaa
atggcaatgggtaaagtcatgccgagctacggtatctctaaacctgagacgaagcacaaa
gcgaaggctgaacaggctgcggcaccagaagtgactacttcagcacttggtggatttgct
tgtcctgaaatggccatgggtaaagtgattgttcgtcgaccagcgtcagtggttgagcct
gtagtcgagcaaaccgtacctttagaaacagctcagttagcggaaacgcctgtgactgag
caagtccaagcatcgatagaaactgcgcaagagaagactgttcgagaagcagttacagca
actgaagtgactgtaagctctgatatcgttgtgccgaaggcatttaaaggtcacgcctct
gcccctatggcaaaagcaccaggcaccacagagatgaaagatattactgtgattgctgcg
cctttccgagaagatcgatacctgtcaaaaggagcaggtagccaagtcgctagcaataaa
gccagcgctgcaatggcaaagcctcaaaacttttag
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