Vibrio neptunius: KW548_15110
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Entry
KW548_15110 CDS
T08906
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
vnp
Vibrio neptunius
Pathway
vnp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vnp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
KW548_15110 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vnp03400
]
KW548_15110 (recD)
Enzymes [BR:
vnp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
KW548_15110 (recD)
DNA repair and recombination proteins [BR:
vnp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
KW548_15110 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
SH3_13
AAA_11
Helicase_RecD
Viral_helicase1
UvrD-helicase
AAA_22
SLFN-g3_helicase
AAA_16
nSTAND3
TraI_hel_assoc_N
CbiA
TrwB_AAD_bind
FtsK_SpoIIIE
DEAD
MukB
AAA_28
T2SSE
UvrD_C
AAA_7
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
QXX06386
LinkDB
All DBs
Position
1:complement(3245706..3247805)
Genome browser
AA seq
699 aa
AA seq
DB search
MHDLFSRLQPLASKGSIRQIDYQFARFILAQSKNEYVAFIAAILSCELGKGHICLPLFDS
YGQPVDLAAKLGVFGDAAFELNQMLQKADWLSLLQASSLVGEQGQTSPMIFDGERLYLHR
YWQYEVVLANRLNSFGSPMILKPTDAQKLADWLNHLFARNYRYLFTALASAQSDGSSTQV
LRQQLVCDHLDVVSSEQLDWPTIDQKLLSATKIEHLKVLDQLVPVSVCVNWQKVAAAVAL
TRRFAVISGGPGTGKTTTVTKLLAALITQAQQAGDAPAIKLVAPTGKAAARLTESIGKAV
AELPVEPALKEQIPTDASTLHRLLGAVPNSVEFRHNQHNPLHLDILVVDEASMVDLPMMY
KLVDALPKHARLILLGDKDQLASVEAGAVLGDICSFYQQGYSATHAGVIAQLTGYQTLSH
SSNTTATIADSLCMLQKSYRFDARSGIGQLAKAINAGSMQKVDWVWQRGFEDIARFPIDG
QHYSQMIQTLAQEYSHYLKRIGKVVVDPDTEQPETTHQRAKDALQLFAKCRLLCAVREGD
FGISGLNQRIERALNARKMIQVQDEIWYHGRPVMVVRNDHALGLYNGDIGLCLRDNSEGV
ERLKVFFELPDGSVKAVLPSRVPEHETAYAMTIHKSQGSEFEHTLMILPPEFTPILTREL
IYTGITRAKQKLSLYVDERVMARGVKIRTERASGLVNRL
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgcatgatctcttttcgcgtcttcagcctctggcgagcaaaggttcaatccgacagatt
gattatcagtttgctcgttttattcttgctcaaagtaaaaatgaatacgttgcttttatt
gccgcaatcctcagctgcgagttaggtaaggggcatatttgcttgcctctgtttgacagt
tacggacagcctgtggacttggcagctaaattgggggtgtttggtgatgcggctttcgag
cttaatcaaatgctacaaaaggcagattggctatcactacttcaggcttcatctttggtc
ggagagcaagggcagacatcgccaatgatttttgacggtgaacgactttacctgcatcgt
tattggcagtacgaagtggtattggcaaatcgcttgaacagctttgggtcacccatgatc
ctaaagcctactgatgctcaaaaactggcagactggctgaatcatctgtttgcccgaaac
tatcgctatctctttaccgctctggcctccgcgcaatctgatgggagctcgacacaggta
cttagacagcagttagtctgcgatcatcttgatgtagtgagcagcgaacaactcgattgg
cctaccatagaccaaaagctccttagtgcgaccaaaatagagcatttgaaagtactggat
caactggtacccgtgtcggtctgtgttaactggcaaaaggtagcggccgctgtggcattg
acacggcgctttgcggtgatttctggtggtccgggtactggaaaaaccaccacagtgacg
aaattgcttgccgccctgatcactcaggctcagcaagcaggcgatgctccggcgattaaa
ctcgtcgctccgacaggtaaagcggcggcgcggttgacggaatccatcggtaaggcggta
gcagaattacccgttgaacctgcgcttaaagagcaaataccaaccgacgcgagtactttg
catcgcttgctaggcgctgtgccaaacagcgttgaatttcgtcacaaccagcacaatcca
ctgcacctcgatattttagtggtggatgaagcctctatggtggatctgcctatgatgtac
aaactggtcgatgcactgcctaaacatgcccgtttgatattgctcggtgataaagatcaa
ctcgcgtcggtggaagctggggcagtgctgggggacatttgttccttttaccaacaaggc
tacagtgcgactcatgctggtgtgattgctcagcttactggctaccagacactgtcccac
tcctccaataccaccgcgactattgctgatagcctgtgcatgttgcaaaagagctatcga
tttgatgctcgctcaggtattggacaattagcgaaagcgatcaacgccggctcaatgcaa
aaggttgattgggtctggcagcgaggtttcgaagacatagcgagatttcctattgatggt
cagcactacagtcagatgattcaaacattggcacaggaatacagtcattacttaaagcga
atcggaaaagtggttgtggatcccgacaccgaacagcctgagaccactcatcagcgtgca
aaagatgcgctgcagctgttcgcaaaatgtcgtttactgtgtgccgttagagaaggggac
tttggtatctctgggcttaatcaacgcatagagcgagcattaaacgcacgtaaaatgatt
caggttcaggacgagatttggtatcacggaaggcccgttatggtagtacgtaacgatcac
gcattgggtttgtacaatggtgatattggtctttgcttacgtgataactcggagggagtt
gagcgactgaaggtgtttttcgaacttcccgatgggtcagtcaaagccgtgcttcccagc
cgagtaccagagcatgaaaccgcttacgcgatgacgattcataaatcacaaggtagtgaa
tttgagcataccttgatgatattgccaccagaatttacgccaattctaactcgcgagctt
atctatacgggcattacgcgtgcaaaacaaaaattgagtttatatgtggatgaaagagtg
atggcgcgaggggtaaagatcagaaccgagagagcgagtggcttagtaaaccgtttataa
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