Vibrio neptunius: KW548_18065
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Entry
KW548_18065 CDS
T08906
Symbol
rnb
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
vnp
Vibrio neptunius
Brite
KEGG Orthology (KO) [BR:
vnp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vnp03016
]
KW548_18065 (rnb)
Enzymes [BR:
vnp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KW548_18065 (rnb)
Transfer RNA biogenesis [BR:
vnp03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
KW548_18065 (rnb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
QXX09006
LinkDB
All DBs
Position
2:complement(297903..299897)
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AA seq
664 aa
AA seq
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MFQDNPLLAQLKQQIQENLPKKEGTIKATEKGFGFLEVDSKTSFFIPPPYMKKCMHGDKV
KAIIRTEKEREVAEPEELVEQGVNRFIGRIKLFKGKLNVAPDHPQLKKLSLKAKVRKGLK
SDEFKEGDWVVAHLTQHPLKGDNGFFVEISEKITDADDKIAPWWVTLAQNDLPNSEPAGI
DNWAIKDDADLARIDMTHIPFVTIDGESTKDMDDALYAKKTETGDFELTIAIADPTAYIT
PDSDMDKVARERGFTIYLPGRNIPMLPRDLADELCSLIENEERPALCCTVTISKDGVIGD
DVKFFAANIKSHARLAYDHVSDWLETGQSESWQPTEDIAEIVRDLYEFSQARAEWRETNA
VVFPDRPDYRFELSEDNDVVAIHSDRRRCANRLVEESMITANICAGKALKASFDSGVFNT
HAGFKPEKIADVIELVNPEGELPFNAESVVTLEGFAELRRWLATQETSYLDNRIRKYQAY
SEIGNQPLPHYAMGLELYATWTSPIRKYGDMINHRMLKAHILGKEPVQIADESVGEELAL
HRKHHKMAERSVSDWLYARTLAEEPAKGTVFNGEIFDVSRAGVRVRLIENGAAAFIPGSL
ILANKERLECNSDLGTVSIDKQVIYRLGDVLELVLSDVNQETRSIVAKPTQVFDDVKAAE
TSTD
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgttccaagataaccctctactggctcaacttaagcagcaaattcaggaaaaccttcct
aaaaaggaaggtacgatcaaagcgactgaaaaaggcttcggctttttagaagtcgacagc
aagaccagcttctttattccgccgccatacatgaaaaaatgtatgcatggtgacaaagtg
aaagccattatccgcacagaaaaagaacgcgaagtagcagagccagaagaactggttgaa
caaggtgtaaaccgttttattgggcgcatcaaactcttcaaaggcaagttgaatgttgca
cctgatcatcctcagcttaagaaactctctttgaaagcaaaggtgagaaaaggcttaaaa
agtgatgaattcaaagagggggactgggtggtggctcatctcacccagcatcctttgaaa
ggcgacaatggtttctttgtcgagatctcagagaaaatcaccgacgctgacgacaagatt
gccccttggtgggtaacgttagcgcaaaatgatttgccaaatagtgagcctgcaggtatc
gacaactgggcaatcaaagatgacgctgatttagcgcgtatcgacatgacgcacataccg
tttgtgaccatagatggtgagtcaaccaaagatatggacgatgcgttgtacgcgaagaag
acagaaaccggtgattttgaactgacaattgcgattgccgatccaacggcctatatcacg
ccagacagcgatatggacaaggttgcccgagagcgtggctttaccatttacctgccgggt
cgtaacatcccgatgctaccgcgtgatttggctgatgaactctgttctcttatcgaaaat
gaagaacgtccagcactttgctgtaccgtaacaatcagcaaagatggtgtgattggcgat
gacgttaagttctttgctgcgaacattaaatcccacgcgcgtctcgcttatgatcatgta
tctgattggcttgaaacagggcaatctgaatcgtggcagcctacggaagacattgctgaa
attgttcgtgacttgtacgagttttctcaagctcgcgcagagtggcgcgagaccaacgcg
gtggttttcccagaccgaccagattatcgctttgagttaagcgaagataacgacgtagtc
gccattcattcagataggcgtcgctgtgcgaatcgcttggttgaagagtcgatgattacg
gcaaacatctgtgcaggtaaagcgctgaaggcaagctttgattcaggtgtatttaatact
cacgcaggttttaaaccagaaaagatcgctgacgtgattgagttggttaaccctgaaggt
gagttgccgtttaatgcagaaagtgtggtgaccctagaaggatttgcggaactccgtcgt
tggttggcaacacaagagacgagctacctagacaatcgtatccgtaagtaccaagcttac
agcgaaattggtaaccaacctttgccccactatgcaatgggcttagagctgtacgctacg
tggacctctccaattcgtaagtacggcgacatgattaaccatcgtatgcttaaagctcat
attttgggtaaagagcccgttcaaatcgcagatgaatctgtgggtgaagaattggccttg
catcgtaagcatcataagatggcagaacgcagtgtgagtgattggttgtatgctcgcacg
ctagctgaagaaccagcaaaaggcaccgtctttaatggagaaatctttgatgtatctcgg
gctggtgttcgagtacgactaatcgaaaatggtgcggcggcgttcatccctggctctctg
attttggcgaataaagagcgattagagtgtaatagtgaccttggtacggtttcgattgat
aaacaagtgatttaccgtttgggcgatgtacttgagttagtcctgagtgacgttaaccaa
gaaacgcgcagtattgtagctaagccgactcaggtttttgacgatgtcaaagcagctgaa
acgagcacagattag
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