Vibrio neptunius: KW548_18070
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Entry
KW548_18070 CDS
T08906
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vnp
Vibrio neptunius
Pathway
vnp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vnp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KW548_18070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vnp03019
]
KW548_18070
03009 Ribosome biogenesis [BR:
vnp03009
]
KW548_18070
Enzymes [BR:
vnp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KW548_18070
Messenger RNA biogenesis [BR:
vnp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KW548_18070
Ribosome biogenesis [BR:
vnp03009
]
Prokaryotic type
rRNA helicases
KW548_18070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Flavi_DEAD
Cas3-like_C_2
WSD
Motif
Other DBs
NCBI-ProteinID:
QXX09007
LinkDB
All DBs
Position
2:300711..302621
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AA seq
636 aa
AA seq
DB search
MTDSVIQFSDLALNDSILSALDGMGFVSPTPIQAAAIPHLMEGTDALGKAQTGTGKTAAF
SLPLLNKINLSQRKPQAIVLAPTRELAIQVAAEMKNLGQNISGLKVLEIYGGASIVDQMR
ALKSGAHIVVGTPGRVQDLINRERLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEHAPAS
AQRVLFSATMPPMLKNIVERFLRDPITIDVAGKNHTVDKVEQQFWVVKGVEKDEAMSRLL
ETEETDASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI
ERVTKSSMEEIQLPLRDKVAEARLVKLGAELEQEKEHKSLEKFGELVEKLQGTLEIDAAT
LAAILLKRQQGKRPLFYIGEDPMIEAIERDKQRRKERREGGRDGRGRDRNFNNQDWDTYQ
LQVGRDQGVQVKDIVGALANELGLVKGSIGAIKLAQGETYVQLPKAMSSETANKLRKLRI
RQKEVGAVVCDFDDFREPRGRRDGGRRDGGRRDGGYRGNRDGNREGGYRGNREGGRGNRD
GGRRDGERRFDRNRGGDHRGNHRGERGHSRDRRSEA
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgacagattctgtaattcagtttagcgacttagcgcttaacgactctatcctttctgca
cttgacggaatgggtttcgtttcaccaactccaattcaggctgcggctatcccgcaccta
atggaaggtacagacgcactaggtaaagctcaaactggtactggtaaaactgctgccttc
tctttacctcttctgaacaaaatcaacctgtctcagcgtaagcctcaagctatcgttcta
gcaccgactcgtgaactagcgattcaggttgcggcagaaatgaaaaacctcggccaaaac
atctctggccttaaggtacttgagatctacggtggtgcttcaatcgttgaccaaatgcgt
gccctcaagagcggtgctcatatcgtggtcggtacaccaggccgtgttcaagatcttatc
aatcgtgaacgtctgcatctagacgaagttcacacattcgttcttgatgaggcggatgag
atgctaaacatgggcttcgttgatgacgtaactgaaatcatggagcatgctcctgcgtca
gcgcaacgtgtgctattttctgccactatgccgccaatgctgaaaaacattgttgagcgt
ttcctgcgcgatcctatcactatcgacgtggcgggtaaaaaccacacggttgataaagta
gagcagcagttctgggttgttaaaggtgtagagaaagacgaagctatgtctcgccttcta
gaaacagaagagactgatgcatcaatcgtattcgtacgtactcgtcaagatactgagcgt
cttgctgattggctatgtgctcgcggcttcaaagcgtctgccctgcacggtgacattcct
cagtctctacgtgagcgtactgttgatcacatcaaacaaggtgttatcgacatcctagtt
gcaactgacgttgtagcacgtggccttgacgttccacgtatcacacacgtatttaactac
gacatcccatttgatgtcgagtcttacatccaccgtatcggccgtacaggtcgtgctgga
cgtaaaggtaaagcgatccttctagttcgcactaaccaaattcgtatgcttcgtaccatc
gagcgcgtgactaagtcttcaatggaagaaattcaacttccacttcgtgacaaggtagca
gaagctcgtttagttaaacttggtgcagagcttgagcaagagaaagaacacaagtctctt
gagaagttcggtgagcttgtagaaaagctacaaggtacgctagagattgacgcagcaaca
cttgcagcaatcctacttaaacgccagcaaggtaagcgcccactgttctacattggcgaa
gatccaatgattgaagcaattgaacgtgacaagcaacgccgtaaagagcgtcgcgaaggt
ggtcgtgacggtcgtggtcgtgatcgtaacttcaataaccaagactgggatacttaccag
cttcaggttggtcgtgatcaaggtgttcaagttaaagatatcgttggcgcactagcaaac
gagcttggcctcgttaaaggctctatcggtgcgattaaactagcacagggcgagacttac
gttcagctgccaaaagcgatgtcttctgagacagcgaacaagctgcgcaaactacgcatt
cgtcagaaagaagtgggtgcggtagtgtgtgactttgatgatttccgtgaacctcgtggt
cgtcgtgacggtggacgtcgcgatggtggtcgccgtgatggcggttaccgtggtaatcgt
gacggaaaccgtgaaggtggctatcgtggtaaccgagaaggtggccgtggtaatcgcgac
ggtggccgtcgtgatggcgaacgtcgctttgaccgtaaccgtggtggtgaccaccgtggc
aaccatcgtggtgaacgcggacatagccgtgaccgtcgcagcgaagcttaa
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