Vibrio neptunius: KW548_21045
Help
Entry
KW548_21045 CDS
T08906
Name
(GenBank) helix-turn-helix domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
vnp
Vibrio neptunius
Pathway
vnp03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vnp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
KW548_21045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vnp03000
]
KW548_21045
03400 DNA repair and recombination proteins [BR:
vnp03400
]
KW548_21045
Enzymes [BR:
vnp01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
KW548_21045
Transcription factors [BR:
vnp03000
]
Prokaryotic type
Helix-turn-helix
AraC family
KW548_21045
DNA repair and recombination proteins [BR:
vnp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
KW548_21045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
HHH
HTH_3
Motif
Other DBs
NCBI-ProteinID:
QXX08148
LinkDB
All DBs
Position
2:971487..972851
Genome browser
AA seq
454 aa
AA seq
DB search
MSGLSSISLQECQSARQARDARFDGRFYVAVKTTGIFCRPICPANLPKEENVEYFVEKAQ
ALQAGYRPCLRCRPDSAPSSWAWKGVETTFLRALKMIEQGELQTSSLVELAERLGISDRY
LRQLFQDHLGMAPKQYALYHQLMFAKQLLHSSSMSVTDIAFASGFNSVRRFNDAFKQVLK
LTPTQVRKDQAMSVVESSYIDLAFKGPLDWQHMLDFYRLRAINGLEHVSDERYQRQFEIE
GANGWFSIRYLKTGIMRVEFELSDTRRLKALVNQLRRVFDLDTDILTIEQTLNAINPSLI
LRSGIRIPGVWNTWEGGVRAILGQQVSIKAAIGQLNLLVKTLQPRGVTHFPTPQEVALAD
LSFLRMPQSRKETLARFAQFMVENPEASLEQWLDVKGIGPWTVNYARLRGASDPNCFLDG
DLVVKKALHQFPELDAERVSPWGSYATFHCWSHA
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atgagcggattatcatccatatcattgcaagagtgtcaaagtgctcgtcaggccagagat
gcacgtttcgatggccgtttctatgtggcagtaaaaaccacaggtattttttgtcgaccc
atatgccccgccaacttacccaaggaagaaaatgtcgagtacttcgtcgaaaaagcgcag
gcgcttcaagcgggttatcgaccttgtttgcgctgtcgcccagacagtgcgccaagttct
tgggcatggaaaggggtggaaacgacgtttcttcgtgctttgaaaatgattgagcaaggc
gagttacaaacgtctagcttggttgagttggccgaacgtcttggcattagcgatcgctat
ttgagacagctatttcaagaccatcttgggatggcaccaaaacaatacgcgctttaccat
caattgatgtttgcgaaacaactgcttcattccagctccatgtcggtgacggatattgcg
ttcgcgagtgggttcaacagcgtccgtcgtttcaatgatgcatttaagcaggttcttaag
ctgaccccaactcaagtcagaaaagatcaggccatgtctgtggtagaaagtagctacatc
gacctcgcgtttaaaggacctttagattggcaacacatgctggatttttaccgcctgcga
gcgataaacggattagagcatgttagcgacgaacgttatcagagacagtttgagattgaa
ggggcgaacggttggttttcgattcgctatcttaagaccggaattatgcgcgttgagttt
gagttgtcggatacccgtcgcctcaaagccttagtgaatcaattgcgcagagtgtttgac
cttgatacagatatcttgaccattgaacagacattgaatgcgatcaatccaagcctaata
ttgcgcagcggaattcgtattcccggagtctggaacacttgggaaggcggtgttcgtgcc
attttgggccaacaagtgtcgatcaaggccgccatagggcaactcaatttactcgttaaa
accttacaacccagaggggtgacacattttcccaccccacaggaagtggccctggccgat
ttatcttttttacgtatgccgcaaagccgcaaagagacattggcccgttttgcgcagttt
atggtagaaaaccccgaagcgagtctagaacaatggcttgatgtcaaaggcattggtccg
tggacggtcaattacgcacggttgagaggagcctctgatcccaattgcttcctagatggt
gatttggtcgtcaaaaaagccctgcatcaattccctgaactggatgctgaacgcgtatct
ccatgggggagctatgccacattccattgctggagccacgcatga
DBGET
integrated database retrieval system
