Vibrio neptunius: KW548_22185
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Entry
KW548_22185 CDS
T08906
Symbol
rtcR
Name
(GenBank) RNA repair transcriptional activator RtcR
KO
K14414
transcriptional regulatory protein RtcR
Organism
vnp
Vibrio neptunius
Brite
KEGG Orthology (KO) [BR:
vnp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vnp03000
]
KW548_22185 (rtcR)
Transcription factors [BR:
vnp03000
]
Prokaryotic type
Other transcription factors
Others
KW548_22185 (rtcR)
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Paralog
GFIT
Motif
Pfam:
RtcR
Sigma54_activat
RtcR_C
AAA_lid_14
Sigma54_activ_2
Mg_chelatase
AAA
AAA_5
AAA_19
AAA_16
MCM
AAA_30
IstB_IS21
GlcNAc_2-epim
AAA_7
AAA_22
AAA_29
NACHT
AAA_14
TECR_N
AAA_2
ATPase_2
T2SSE
AAA_PrkA
Motif
Other DBs
NCBI-ProteinID:
QXX08348
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Position
2:1203806..1205398
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AA seq
530 aa
AA seq
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MSKRTVAISLIGTQLDFVGKRVDRWARWRPNVSLCSQQDLLVDELHMLHDNHSYRLANNV
AVDIESVSPKTKVTLHSINFSDPWDFEEVYAKLFDWCQQQEFDTDNNDYLFHITTGTHVV
QICSYLLTESRHFPGRLIQTSPDHNNNNKSIGRVQIIDLDLSKYDQLATRFDVEHQEGKE
FLKGGIETLNTGFNRLITQLEKVAIRSEDPMLLTGPTGAGKSQLATRIYQLKKRRAMLSG
ALVSVNCATLKGENAMAALFGHTKGAFTGAQKSRDGFLLTANDGVLFLDEIGELGLEEQA
MLLHAIENKTFHPVGSDSPVQSDFQLIAGTNRDLKLEIEKGTFREDLLARINLWTYQLPA
LKDRKEDIPANVDYEIDLYAQKSGQRVQFNKEAKHAFISFATSNEALWVGNFRDLSSAIT
RLCTLADSSRISVDDVKDEIERLKRAWYPTRQQSKLTHVEACLSVAEVEQLDQFDANQLN
FVLSVCRRHSSMASAGRELFNVSRTLKAQTNDSSRLQKYLAKFGLKWADL
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgagtaagagaacagtggcgataagtcttattggaactcaattggattttgttggtaaa
agagtggaccgatgggcaaggtggcggcccaatgtgagtttgtgcagtcagcaagacttg
ctggtcgatgagctacacatgctgcatgataaccacagctatcgcttggcaaataacgtc
gctgtagacatcgaatctgtgtctccaaaaaccaaggtgacactgcattcgattaacttt
tccgatccgtgggattttgaggaagtctacgccaagctttttgattggtgccaacaacaa
gaattcgatactgataacaacgactacctttttcatatcacaaccggaacacacgttgtt
caaatttgtagttatttacttaccgagagtcgtcactttccagggcgtttaattcaaacc
tctcctgatcacaacaataacaacaagtcgattggacgtgtgcaaatcatagaccttgat
ttgtcgaaatatgaccaattggcgacccgttttgatgtcgaacatcaagaaggcaaagag
tttcttaaagggggcattgaaacacttaatacagggtttaaccgattaattactcagtta
gaaaaggtcgcgatacgttctgaagaccccatgctattaacgggcccaaccggagcaggc
aaaagccaattggcgactcgcatctaccaactgaaaaagagacgtgcaatgctttctggc
gctttggtatccgtaaactgtgcgacgctaaaaggcgaaaatgctatggcggccttattt
ggtcataccaaaggtgcattcactggcgctcaaaaatcacgagatggttttttgcttaca
gccaatgatggcgttttgttcttagatgagattggtgagctgggcctcgaagagcaagcc
atgctactgcatgcgattgaaaataaaacatttcatccggtagggagtgatagccctgta
cagagtgattttcagttgattgcgggtaccaatcgagatctcaagctcgaaattgaaaaa
ggcacgtttagggaagatttgttagcgcgtatcaatctttggacttatcagcttcctgca
ttaaaagacaggaaagaggatattcctgccaacgttgattatgaaattgatttgtacgcg
caaaaatcaggacaacgggtgcagtttaacaaagaggcgaagcatgcttttatcagtttc
gctacgtccaacgaagcgttatgggttggaaactttcgagacttaagttcagcgatcaca
aggctttgcaccttagcagactcttcgagaatttctgttgacgatgtaaaagatgaaatt
gaacgactaaagcgcgcttggtatcccactcgtcagcaatctaagctcacgcacgtagaa
gcgtgtttgtcggttgctgaggtggaacaactggaccaatttgatgccaaccagttaaat
tttgtgttgtctgtatgtcgccggcacagcagcatggcttctgctggtagggagttgttt
aatgtgagccgaacattgaaagctcaaactaacgactcaagtcggttgcagaaatattta
gctaagttcggattgaaatgggctgacctatag
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