Vibrio neptunius: KW548_24520
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Entry
KW548_24520 CDS
T08906
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vnp
Vibrio neptunius
Pathway
vnp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vnp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KW548_24520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vnp03019
]
KW548_24520
Enzymes [BR:
vnp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KW548_24520
Messenger RNA biogenesis [BR:
vnp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KW548_24520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
P-loop_SecA
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
QXX08734
LinkDB
All DBs
Position
2:complement(1710631..1711893)
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AA seq
420 aa
AA seq
DB search
MSSFQHLGLSQALASTVEKLGFDTPTPIQEQAIPHVLEGKDLLAGAQTGTGKTAAFGLPL
LNKLLDQETSRDLQSNDVLALVVVPTRELAQQVFDSLTAYASATEIKIVTAYGGTSMNVQ
TQNLRQGCDVLIATPGRLLDHLYCKNINLRKTSYLVLDEADRMLDMGFMPDIQRILKKLN
PERQTLFFSATFDKRIKAIAHKLMNEPVEVQVTPSNSTAETVKQMVYPVDKKRKAELLAY
LIGSRNWQQVLVFTKTKQGSDALAKELKLDGIKAASINGDKSQGARQKALDDFKLGTIRA
LIATDVAARGLDINQLEQVVNFDMPYKAEDYVHRIGRTGRAGQEGLAVSLMSKDEEYLLE
AIERLLDARLPQEWLQGFEPSIEAPTENERERGARRKSRSSEKRKMKAKLKIHANRGKKK
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcatttcaacatctgggcctgtctcaagcacttgcatctactgtagaaaaatta
ggttttgacacgccaacgcctattcaagagcaagccattcctcacgtacttgaaggaaaa
gatttgctggcgggcgctcagacaggaacagggaaaaccgctgcctttggcttgccacta
ctcaacaagctacttgatcaggaaacgtcgcgagatcttcaatcaaatgatgtcttagcc
ttggtggttgttcctacccgtgagttggcgcagcaagttttcgacagcttaacggcttat
gcgagtgcgactgagatcaaaattgtgaccgcttacggtggcaccagtatgaatgttcag
acgcaaaatctgaggcagggttgtgacgtattgatcgcaacccctggacgtttattggat
catctctactgcaaaaacatcaatcttagaaaaaccagctacttggtactggatgaagcc
gatcgcatgctagatatgggattcatgccagatatccaacgtatattgaaaaagctcaac
cctgagcgtcagactttgttcttctctgcgacatttgataagcgcatcaaggccattgct
cataaattgatgaacgagccagtagaggttcaggtaacgccgtcaaatagtacggctgag
acagtcaaacagatggtttaccccgtcgataaaaagcgtaaagctgaacttcttgcctac
ttaattggttcacggaactggcagcaggtattggtgtttaccaagactaagcagggcagc
gatgcgcttgcgaaggagcttaaacttgatggaatcaaagcagcgtcgatcaatggggat
aaaagccaaggtgcacgtcagaaagcattagacgattttaaattgggtacaattagggcg
ttgattgcaaccgatgtagcggcgagagggttggatattaatcagctagaacaggtggtt
aactttgatatgccatacaaagccgaagactacgttcatcgaattggtcgtactggccga
gctggtcaagaaggtctggcggtatcgctgatgagtaaagatgaagaatacttgctcgaa
gcgatagagaggctcctggatgctcgtttgccacaagagtggctacagggctttgaaccg
agtattgaagcgccaactgaaaatgaacgcgagcgcggtgcaagacgaaaaagtcgctct
tcggaaaaacgaaagatgaaagcgaagctcaagattcatgcgaatagaggcaagaagaag
tag
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