Virgibacillus natechei: OLD84_01350
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Entry
OLD84_01350 CDS
T08602
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vnt
Virgibacillus natechei
Pathway
vnt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vnt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OLD84_01350 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vnt03021
]
OLD84_01350 (rpoC)
03400 DNA repair and recombination proteins [BR:
vnt03400
]
OLD84_01350 (rpoC)
Enzymes [BR:
vnt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OLD84_01350 (rpoC)
Transcription machinery [BR:
vnt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OLD84_01350 (rpoC)
DNA repair and recombination proteins [BR:
vnt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OLD84_01350 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
UZD13240
LinkDB
All DBs
Position
225724..229335
Genome browser
AA seq
1203 aa
AA seq
DB search
MLDVNNFEYMKIGLASSEKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPQKDWEC
HCGKYKRVRYKGVVCDRCGVEVTKAKVRRERMGHLELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFAAYIVTDSGDTPLEKKQLLSEKEYRTYYDKYGKSFKAGMGAEAIRRLLQ
DIDLEKEVEGLREELKTAQGQRRTRAIKRLEVIESFRHSGNDTSWMVLDVLPIIPPEIRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPRE
MALELFKPFVMRELVAKGIAHNIKSAKRKVERVHPDVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPVLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARILMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLEREGAVGEGSVFNNVDEALLSYQNGYVHLHTRVAVH
ASGLKNNTLTEKQHNQLLLTTVGKLIFNEILPESFPYINEPTNSNLEIKTPENYFVDYGT
NIKEEIKNRDLIGPFKKGILGDIIAEVFKRFKISETSKMLDRMKDLGFYYSTKAGITVGV
SDIVVLAEKEEILEEAQKNVDNVSKQFRRGLITDDERYDRVIAIWSQAKDTIQQKLMESL
SDKNPIFMMSDSGARGNASNYTQLAGMRGLMANPAGEIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVREADCKTDRGLTVSALADGTELIEPLY
DRLVGRTLFHSIKHPETGDVIVEKEEVISEDQAKLVVDAGVEDVTIRSAFTCNTKHGVCK
KCYGRNLATGDEVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQELF
EARNPKGQAVISEVYGTILEMKEVKDKQEIVVQSDVEQRSYPVPYNARMKVSVGDEVIAG
EPLTEGSIDPKDLLRIQGVEGVQDYLLREVQRVYRMQGVEIGDKHVEVMVRQMLRKIRVV
EAGDTTELPGSLLELHKFRDANHTVLNEGQQPATGKPVLLGITKASLETDSFLSAASFQE
TTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGINRYRNVKASTDVTEDTTESTEESE
TVQ
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
ttgctagatgtaaataactttgagtatatgaaaataggtttagcttcatctgaaaagatt
cgctcttggtcttacggcgaggttaaaaagccagaaacgattaattatcgtacattgaaa
ccagaaaaagatggtttgttttgtgaacggattttcggcccgcaaaaagattgggaatgt
cattgcggtaagtacaaacgcgtacggtataaaggtgttgtctgtgatcgttgtggagtt
gaagtaacaaaagctaaagttcgccgtgaacgcatgggacaccttgagttagctgctcct
gtatcacatatttggtattttaaaggtatccctagccgaatgggacttgtattagacatg
tctccgagagctttggaagaagttatttattttgctgcatatatcgttacagattcagga
gacactcctttagaaaagaaacagctgctatcagaaaaagaataccgaacctattatgat
aagtatgggaaatcttttaaagctggaatgggtgccgaagccatccgcaggcttcttcaa
gacattgatcttgaaaaagaagttgaagggttaagagaagaattaaaaacagcgcaagga
caacgtagaacacgtgcaatcaaacgcttagaagtaatcgagtcatttcgtcattcagga
aacgatacatcttggatggtattggacgtattgccgatcattccaccggaaatacgacca
atggtacagcttgacgggggacgttttgctacatccgacctaaatgatttatatagacgc
gttatcaaccgtaacaaccgtttgaagcgtttgttggatcttggggcaccaagcattatc
gtacaaaatgaaaaacgaatgcttcaagaagcagtagacgccttgattgacaatggccgt
cgtggccgtccagttacaggtcctggtaaccgaccacttaaatccttgtctcacatgtta
aaagggaaacaaggacgttttcgtcagaacttattaggaaaacgtgttgattattctgga
cgttccgttatcgtggtaggacctaacctaaagatgtatcaatgtggtctacctagggag
atggcgttggagctatttaagccatttgttatgagagaattagtagcaaaaggaattgct
cataacatcaaatcggccaaacgtaaggtagaacgcgtgcatccggatgtttgggatgta
ttagaagaagtaatcaaagaacatcctgtattgcttaaccgtgcaccaacattgcaccga
ttaggcattcaggcatttgaaccagtattagttgagggtcgtgccattcgtttacaccca
ttagtatgtacggcatataatgctgactttgatggtgaccaaatggccgttcacgttccg
ttatcagcagaagctcaagcagaagcgcgcatcttaatgcttgcagcgcaaaacattcta
aatccgaaagatggaaaaccagttgttaccccatcacaggatatggtactaggtaactat
tacttgacgctggaacgagagggtgcagttggtgaaggaagtgtgtttaacaacgttgat
gaggcattgctttcctatcaaaacgggtatgtgcatttacacactagagtagcggttcat
gcatctggcttgaagaacaacacgctaacggaaaagcagcataatcaattgttgttaaca
acagtaggtaaactgatttttaatgaaattttaccagagtcgttcccatatattaatgaa
ccgacaaatagtaaccttgagattaaaacccctgagaattactttgtggactatggaacg
aacattaaagaagaaattaaaaaccgcgatcttattggtccctttaagaaaggtattttg
ggtgatattattgctgaagtcttcaagcggtttaaaattagtgaaacatcaaaaatgctt
gaccgcatgaaagacctaggattttactattctacaaaagccggtatcactgttggcgta
tctgacattgttgtgttagctgaaaaagaagaaattcttgaggaagcgcagaaaaatgtg
gataacgtatcgaaacagttccgtcgtggtttgattacggatgatgagcgttatgacaga
gtaattgcaatatggtcacaagcaaaagataccattcaacaaaaattaatggaatcatta
agtgacaaaaaccctatctttatgatgagtgattcaggagcaaggggtaacgcttcaaac
tacacacagcttgctggtatgcggggtctaatggcgaatccggctggggaaatcattgaa
ttaccgattaagtcaagtttccgcgaagggctaactgtacttgaatactttatttctaca
cacggtgctcgtaaaggacttgctgatactgcactgaaaacagctgactctggttatcta
acaagacgtctcgtggatgtggcgcaagatgttatcgtccgtgaagcagactgtaaaacg
gatcgcggtttaaccgtatccgcattagcggatggaacagagctaattgagccgttatac
gatcgattagtaggacgtacgcttttccattcgatcaagcatcctgaaacaggcgacgta
attgttgaaaaggaagaagttatttctgaggatcaggcaaaacttgttgttgatgctggt
gtcgaagacgtaacgatacgttctgcatttacatgtaatacgaaacatggcgtatgtaaa
aaatgttatggaagaaatctcgcaacaggtgatgaagtcgaagttggtgaagcagtaggt
attattgctgcacaatccattggtgaaccaggtacacagttaacgatgcgtacgttccac
acaggtggagttgctggtgatgacattacgcaaggtcttccgcgtatccaagaactattt
gaggcacgtaatccaaaagggcaagcggttatcagtgaagtttacggcacaatattagaa
atgaaagaagtgaaggacaaacaggaaatagttgttcaaagcgatgtagagcaacgctcc
tatccagttccttataacgctcgtatgaaagtttctgtaggcgatgaagtaattgcagga
gagcctctgacagaagggtcgattgatccaaaagatctactacgcatacagggtgtagaa
ggtgttcaagattacctattacgtgaagtacaacgggtataccgtatgcagggtgttgaa
attggcgacaaacacgttgaagtaatggttcgtcaaatgctgcgtaaaatccgtgtcgtg
gaagctggggatacgacagaacttccaggttcattacttgaactgcataaattcagagat
gcaaaccatacggttctaaacgaagggcaacagccggcaaccggaaaacccgtattactt
ggcataacgaaggcatcactagaaacagattccttcttatctgcggcatcattccaagaa
actacgagagttcttacagatgcagcgattaaaggtaagcgtgatgaattattagggctc
aaggaaaatgttattatcggtaaactagtaccagctggtacagggatcaaccgataccgt
aatgtaaaagcatctacagatgttacggaagataccaccgaatcaacggaagaatcagaa
acagtacaatag
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