Virgibacillus natechei: OLD84_04500
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Entry
OLD84_04500 CDS
T08602
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vnt
Virgibacillus natechei
Pathway
vnt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vnt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OLD84_04500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vnt03019
]
OLD84_04500
03009 Ribosome biogenesis [BR:
vnt03009
]
OLD84_04500
Enzymes [BR:
vnt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OLD84_04500
Messenger RNA biogenesis [BR:
vnt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OLD84_04500
Ribosome biogenesis [BR:
vnt03009
]
Prokaryotic type
rRNA helicases
OLD84_04500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
UZD13818
LinkDB
All DBs
Position
809728..811203
Genome browser
AA seq
491 aa
AA seq
DB search
MTTFKELGVSTPIMKALEKMGFEESTPIQAETIPLAMQGNDVIGQAQTGTGKTAAFGIPM
IEKIDPKERKIQGLIVAPTRELAVQVAEEINRLAKFKGVRALSIYGGQHMERQIRALKDG
PHIVVATPGRLLDHMRRKTIRINMVQTAVLDEADEMLNMGFIDDIRDILKGIPEERQTLL
FSATMPKEIRDIATNLMKSPKEIKVKAKEMTVENIDQYFIEIPEKFKFDTLNNHLDINAP
ELAIIFSRTKKRVDEITEGLQARGFRAEGTHGDLTQGKRTSVLSKFKSGRIDVLVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGEAISFITPREIGHLKSIEKVTK
SKMKRLMPPTNQDAQRGQQQVTVDKLTKTIEQKDLQAYHETANGLLQENDSITVIAAALK
LLTKERRDTPVRISSVAPISVKGPNRSKDNNRRPNNKRHYSGQRGQGGRNQGGRNQGGRN
RKGNYQKRRND
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
gtgacaacatttaaagaactaggtgtatcaacccccattatgaaagcattggagaaaatg
ggatttgaagaatcaacaccaatccaagcagagacaatacccttagcaatgcaagggaat
gacgttattggacaagctcaaacaggtacaggtaaaacggcagcctttggtattccgatg
atcgaaaaaatcgatccaaaagaaaggaagatacaagggttaattgtagctccaacacgt
gagctcgccgttcaagtagctgaagaaattaaccgattggcgaaatttaaaggtgttcgc
gcattatccatttatggtggtcaacacatggaaagacaaatacgtgcgttgaaggacggt
ccacatattgtcgttgcgactccagggagattgcttgatcatatgcgcaggaaaaccatt
cgtataaatatggtacaaacggcagtattagatgaagcggatgaaatgctgaacatgggt
ttcattgacgatattcgtgatattctgaaaggaatcccagaagaaaggcaaacgttatta
ttctcagctaccatgccaaaagaaattcgtgacattgcaacgaacttaatgaaaagcccg
aaagaaatcaaagttaaagcaaaagaaatgacagtagaaaatattgatcagtattttatc
gagatccctgaaaaattcaaattcgatacattaaataatcatctagatattaatgcgcca
gaactagcaattatatttagtagaacgaaaaaacgtgtggatgaaataacggaaggtttg
caggcaagaggattccgtgctgaaggaacgcatggtgatctgacgcaaggcaagcgaacg
tctgtattaagtaaatttaagtctggccgaattgatgtattagtcgcaacggatgttgca
gcacgcggtttagatatttctggtgtaacgcatgtgtataactttgatattccgcaggat
cctgaaagttatgtacacagaattggacgtactggccgagctggtaaaacaggggaagcc
atttccttcattacgccaagagaaataggacatttgaaatcgattgaaaaagttacgaaa
agtaagatgaaacgcctgatgccaccaacgaaccaagatgcacaaagagggcagcaacaa
gtaacagtcgataaactaacaaaaacaatcgaacaaaaggatctacaagcgtatcatgaa
acagcaaatggattattacaggaaaatgattctataacggttattgcagctgcattgaaa
ttacttacaaaagaacgtagagatacaccagtaagaatttcttctgttgctcctatcagt
gtgaaaggaccgaaccgttctaaagataataatcgccgtccgaacaataagcgacattat
tcaggacaaagaggtcaaggcggccgtaatcaaggtggacgtaaccaaggcggaagaaac
cgtaaagggaattaccaaaaacgcagaaacgattaa
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