Virgibacillus natechei: OLD84_07175
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Entry
OLD84_07175 CDS
T08602
Symbol
addB
Name
(GenBank) helicase-exonuclease AddAB subunit AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
vnt
Virgibacillus natechei
Brite
KEGG Orthology (KO) [BR:
vnt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vnt03400
]
OLD84_07175 (addB)
Enzymes [BR:
vnt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OLD84_07175 (addB)
DNA repair and recombination proteins [BR:
vnt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
OLD84_07175 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ADDB_N
PDDEXK_1
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
UZD14876
LinkDB
All DBs
Position
1352989..1356477
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AA seq
1162 aa
AA seq
DB search
MGLRFLLGRAGTGKSGRSLDEIKEKLVDDPQGPPLFYIVPDQMTFQQEYALFNDEEVKGS
IRAQVVSFSRLAWRVLQETGGGTRQFISSVGIQMMLRKIIEERQGDWRVFQKAMEKQGFL
DQLENMITEFKRYDVTPDTLQTQIEQIKQYVHKNPGEEALAEKLDDLAYIYEKLVFALDD
KYIDSEDQLQLLATKIEESALLDNAEIYFDGFHGFTPKELIVVEALMKKCKRVTITLTVD
HEEDRGVSELDLFYQTMQTYQVLSEIARENQINIEEPVTLDPVNGKFRDRPYLAHLERNF
DARPAPAYAGEVPINIAEAVHPRAEVEGAAQEIIRLVREEKYRFQDIAVFIRETDTYHDL
INTIFNDYDIPVFIDEKRTMLNHSLIEFIRSVLDVVEGNWRYDAMFRLLKTGFIPPTDPD
FPLTNDAIDELENYVLEYGIRSRGSWIGEQEWVFQRFRGFDQAAQTDSEIEIQQRINKYR
DQVVHILQPFDEQIRNASTVEELCEVTYTLLETINVPKRLEQTRELYDEQGEIEKGREQE
QAWNAIIQLFDEMVEMAGEEKMKLSTFRTTLDAGFETLSFAHVPPSIDHVIVGTVEHSRL
SGVKCSFLLGVNDGVWPLKPAVDGMINEQERELLAGHGMQLAESSKQQLLDDWFYMYIAF
TAAKDRIWISYPLSDEEGKSKMPSQLMKRIEDLFPVCTNHILLQDPDELVEADRFITTPL
KTRSALTAQLARHRKGYPMNEVWWHVLNWYVAHHSKNSTTYTVLQSLYYQNKPNNLSSDT
VEKLYPQQVNASVSRLESYYRCSYQHFAKYSLNLDERKTYKLDAPDIGQLFHEALKKISE
WIESDGKQFAQLSRKDTDNYAEKAVVNLAPVLQHQILHSSNRYKYIQQKLQDVIARAAFV
LSEQARQSNFTPVGLELGFGQNETLPAFKLGLPNGYELMLRGRIDRVDKALNEEDLFLRI
IDYKSSSKGLNLVEVYYGLALQMLTYLNVVLANSEQWLGKNAIPAGVLYFHVHNPMISRN
QKVSDAEIEKDIFSKYKMQGLLLSNEEIVKQMDTPLESGTSQIVPAGLKKNGGFYNSSKI
ADKATFTHLQNHIHQLMTDAGVDMTEGGIHLNPYQHKQHVACTHCPFHSVCQFDPILETN
NYRKLTDMKEDDILERLRGEEI
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atggggctccgatttttgttgggaagagcagggacaggtaaaagcggtaggtctctggat
gaaataaaagaaaaattagtggatgatccacaaggtcctccactattttatattgttcca
gatcaaatgacatttcagcaggaatatgcattatttaatgatgaagaggtaaaggggagc
attcgcgcacaagtcgtcagtttttcgcgattagcatggagggtgctgcaggagactggt
ggtggaacaaggcaattcattagttcagtcgggattcaaatgatgctccggaaaattatc
gaggaaagacagggagattggcgtgtttttcaaaaggcaatggaaaagcagggattcctg
gatcaattggaaaacatgataacagaatttaagcggtatgatgtaacaccggacacgcta
caaacgcaaatagaacaaataaaacagtatgtacataaaaatcctggcgaagaggcatta
gccgaaaagttagatgatttggcctatatatatgaaaaattggtattcgcacttgatgat
aaatatatcgacagtgaagatcagttgcagcttttggccactaaaattgaggagtcagcc
ctacttgataatgctgaaatatattttgatgggtttcacgggtttacaccgaaagagctt
attgtagttgaggcattaatgaaaaaatgcaaacgtgtaacgattacgttaacggtcgat
cacgaagaagatagaggagtttcggagctggatttattttaccagacaatgcaaacttac
caggttctatcggaaattgctcgtgaaaatcaaattaatatagaagaaccagttacatta
gatccggttaacggaaagtttcgggatcgaccatacctagcacatttggaacgtaatttt
gatgcgaggcctgctccagcatatgctggggaagtgccaattaacattgcagaagctgtg
catccacgcgcagaagtagaaggtgctgcacaggaaattattcgtctggttcgtgaagag
aagtatcgttttcaggatatcgctgtctttataagagagacggatacgtatcatgatttg
attaatacaatatttaatgattatgatattcctgtgttcattgatgaaaaaagaaccatg
ctgaaccattcattgatcgagtttattcgttctgtattagatgtcgtggaagggaattgg
cggtatgatgccatgttccgcttgttgaaaaccgggtttatacccccaacagatcctgat
tttccgttaactaatgatgcgattgatgaactggagaattatgtgcttgaatatggaatt
cgttcgagagggagttggattggtgaacaagaatgggtttttcagcgttttcgcggcttt
gatcaggcagcacaaaccgactcggaaatagaaatacaacagcgaatcaacaagtaccgg
gatcaagtggtccatatcctgcaaccttttgatgaacaaataagaaatgctagcaccgtt
gaggaattatgtgaagtgacctatacgttacttgaaacgattaacgttccaaaacgttta
gaacagacacgagagctctatgatgaacaaggtgaaattgaaaaaggacgagaacaggaa
caagcttggaatgccatcattcaactatttgacgaaatggtcgagatggcaggcgaagaa
aaaatgaaactatcaacatttcggacaacgttggatgctggttttgaaacattaagtttt
gcgcatgttccgccaagtattgatcatgtcattgttggtaccgttgagcattctagacta
agcggggtgaaatgctcatttttacttggagttaatgatggtgtatggccattgaagcct
gctgtagatggaatgattaacgagcaggaacgagaattattagcgggacatggtatgcag
ttagcagaaagtagcaaacaacaattattggacgactggttttatatgtacattgcattt
accgcagcaaaagaccgaatttggataagctatcctttaagtgatgaggaaggtaaatcg
aaaatgccatcacagcttatgaaacgaatcgaggacttatttccagtatgcacgaatcat
attttactgcaggatccggatgaattagtagaagcagatcgatttattacgacaccatta
aaaacaaggtctgctttaacagctcaattggctcgacatcgaaaaggctatccaatgaat
gaagtttggtggcatgtattaaattggtacgttgcccatcattcgaaaaacagtacaaca
tataccgttttgcaaagtttatattatcaaaacaaaccaaacaatctatcatccgacact
gtagagaaattatatccacaacaggttaatgcgagtgtttctagattggaatcgtactat
cgatgctcgtatcagcattttgcaaaatacagcttgaatttagatgaacgaaaaacatat
aaattagatgcaccggatatcggacagctttttcatgaagcattaaagaagatttcggag
tggatagaatcagacggaaagcaatttgcacagctatcgaggaaagatacggataattat
gcggagaaagcggtcgttaatttagcgccagtcttacagcatcaaatactgcatagctcc
aatcgctataaatatattcaacagaaattacaggatgttatcgcaagagctgcctttgtg
ctaagtgaacaggcaagacaaagtaactttactcctgttggattagaactcggatttggt
cagaatgaaacactccccgcctttaagcttggcttaccaaacggatatgaacttatgctt
cgtggacgaatagaccgtgtggataaagcgttaaatgaagaggatttatttttgcgaatt
attgattataaatcgagttcgaaggggttgaatctagtcgaagtttattatgggctggca
ttacaaatgctaacctatttgaatgtcgtactagctaattctgaacaatggcttggtaaa
aacgcaatacctgcaggggttctttattttcatgtgcataatccgatgatatcaagaaat
caaaaggtgagcgatgcagagattgagaaggatatatttagcaagtataaaatgcaaggg
ttgctcttatcgaatgaagaaattgttaagcaaatggatacaccattggaatcaggtaca
agtcaaattgtgccggcaggtttaaaaaagaatggtggcttttataattcatccaaaatt
gctgataaagcaacgttcactcatttgcaaaatcatattcatcagctgatgacggatgct
ggtgttgacatgacagaaggaggcatacacctaaatccatatcaacataagcagcatgta
gcctgtacacattgtccttttcattccgtttgccaatttgatccgatcttggagacgaac
aattaccgaaagcttacagatatgaaagaggacgacattttagaaagactccgtggggag
gagatataa
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