KEGG   Virgibacillus natechei: OLD84_08275
Entry
OLD84_08275       CDS       T08602                                 
Symbol
rnjA
Name
(GenBank) ribonuclease J1
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
vnt  Virgibacillus natechei
Pathway
vnt03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vnt00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    OLD84_08275 (rnjA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vnt03019]
    OLD84_08275 (rnjA)
Messenger RNA biogenesis [BR:vnt03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     OLD84_08275 (rnjA)
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B RMMBL Lactamase_B_2 Anti-Pycsar_Apyc1 DUF4453
Other DBs
NCBI-ProteinID: UZD14477
LinkDB
Position
complement(1578077..1579744)
AA seq 555 aa
MKFVKNDQTAVFALGGLGEIGKNTYAVQFQDEIILIDAGMKFPEDELLGIDYVIPDYTYL
VQNQDKIKGLFVTHGHEDHIGGIPYLLREINIPIYAGKLALGLIRNKLDEHGLLRNAKLY
PFQEDDVIKFRKTSVSFFRTTHSIPDSYGIVVKTPPGNIVHTGDFKFDFTPVGEPADITK
MAEIGKEGVLCLLSDSTNSEIPGFTMSEKKVGGNINDIFSRVDGRLIFATFASNIYRLQQ
VVEAAVKHDRKVAVFGRSMESAIRLGQELGYIQAPKNTFIEPNQINRLPASEVTILCTGS
QGEPMAALSRIANGTHRQIQMIPGDTVVFSSSPIPGNTVSVSRTINKLYRGGADVVHGPL
TNVHTSGHGSQEEQKLMLTLMKPKYFMPIHGEYRMLKEHIKLAEDCQVDPANSFVMDNGD
VLALGKDEAIIAGKIPSGSIYVDGSGIGDIGNIVLRDRRILSEEGLLIIVVSINMKEFKI
TSGPDIISRGFVYMRESEDLINEAQKLVSTHLEKVMERKTTQWSEIKNEITDTVAPFLYD
KTKRRPMVLPIIMEV
NT seq 1668 nt   +upstreamnt  +downstreamnt
atgaaattcgtaaaaaatgaccaaacagctgtatttgcactaggtggactaggtgaaata
ggtaaaaacacgtatgccgtacaatttcaggatgaaataattctaattgatgccggtatg
aaattccctgaagatgaattacttggaattgattatgtaataccagattacacctatcta
gttcaaaaccaagataaaataaaaggattattcgtaacacatggacatgaagaccacatt
gggggtatcccttatctcctacgtgaaataaatataccaatttatgctggaaaactcgcg
ctaggcttaattagaaacaaattggatgaacatggtttattaagaaatgctaaattatat
ccatttcaggaagatgatgttattaaattccgtaaaacttccgttagctttttccgtaca
acgcatagtatacccgattcctatggtattgttgttaaaacacctcctggtaatatcgtt
catacaggtgattttaaatttgatttcacccctgttggcgaaccggccgacataacaaaa
atggctgagataggtaaagaaggcgtactttgcttactctcggatagtacaaacagcgaa
attcctggatttacaatgtcggagaagaaagttggaggaaatataaatgatatttttagt
cgggtcgatggcagactaatatttgccacatttgcctccaatatttaccgattacaacaa
gttgtagaagctgctgtaaagcacgaccgaaaagtcgctgtatttggacgcagtatggaa
tctgctataagacttggacaggaacttggttacattcaagctccaaaaaatacgtttatt
gagccaaatcaaatcaaccgtcttcctgcttcagaggtaactattctttgtacgggatct
caaggtgaaccgatggcagctctttctcgtattgcaaacggaacacatagacagatacaa
atgatacctggtgacactgttgtattttcttcatcaccaatccctggaaacacagttagt
gtcagcaggaccattaacaaattgtatcgtggaggtgctgatgttgtccatggtccttta
actaatgttcacacatcaggtcatggaagtcaggaagagcagaaattgatgcttacgctc
atgaaaccgaagtactttatgccaattcacggcgaatatagaatgttaaaagaacatata
aaactggcagaggattgtcaagtagatccagcaaattccttcgtcatggataatggtgat
gttctagcattaggcaaggatgaagctattatagctggtaaaattccttcaggatcgata
tatgttgatggtagcggtattggcgatataggaaatatcgtgctccgcgaccgccgcatt
ttatctgaagaagggttgctaattatcgtagtcagtatcaacatgaaagaatttaaaatc
acttcaggacctgacattatctcacgtggatttgtttatatgagagaatcagaagacttg
ataaatgaagcgcaaaaacttgtttccactcacttggaaaaagtaatggaaagaaaaaca
acacagtggtctgaaattaaaaacgaaattaccgatacagtagcaccattcctttatgat
aaaacaaaacgcaggccaatggttcttccgattataatggaagtatga

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