Virgibacillus natechei: OLD84_08275
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Entry
OLD84_08275 CDS
T08602
Symbol
rnjA
Name
(GenBank) ribonuclease J1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
vnt
Virgibacillus natechei
Pathway
vnt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vnt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OLD84_08275 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vnt03019
]
OLD84_08275 (rnjA)
Messenger RNA biogenesis [BR:
vnt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OLD84_08275 (rnjA)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF4453
Motif
Other DBs
NCBI-ProteinID:
UZD14477
LinkDB
All DBs
Position
complement(1578077..1579744)
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AA seq
555 aa
AA seq
DB search
MKFVKNDQTAVFALGGLGEIGKNTYAVQFQDEIILIDAGMKFPEDELLGIDYVIPDYTYL
VQNQDKIKGLFVTHGHEDHIGGIPYLLREINIPIYAGKLALGLIRNKLDEHGLLRNAKLY
PFQEDDVIKFRKTSVSFFRTTHSIPDSYGIVVKTPPGNIVHTGDFKFDFTPVGEPADITK
MAEIGKEGVLCLLSDSTNSEIPGFTMSEKKVGGNINDIFSRVDGRLIFATFASNIYRLQQ
VVEAAVKHDRKVAVFGRSMESAIRLGQELGYIQAPKNTFIEPNQINRLPASEVTILCTGS
QGEPMAALSRIANGTHRQIQMIPGDTVVFSSSPIPGNTVSVSRTINKLYRGGADVVHGPL
TNVHTSGHGSQEEQKLMLTLMKPKYFMPIHGEYRMLKEHIKLAEDCQVDPANSFVMDNGD
VLALGKDEAIIAGKIPSGSIYVDGSGIGDIGNIVLRDRRILSEEGLLIIVVSINMKEFKI
TSGPDIISRGFVYMRESEDLINEAQKLVSTHLEKVMERKTTQWSEIKNEITDTVAPFLYD
KTKRRPMVLPIIMEV
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcgtaaaaaatgaccaaacagctgtatttgcactaggtggactaggtgaaata
ggtaaaaacacgtatgccgtacaatttcaggatgaaataattctaattgatgccggtatg
aaattccctgaagatgaattacttggaattgattatgtaataccagattacacctatcta
gttcaaaaccaagataaaataaaaggattattcgtaacacatggacatgaagaccacatt
gggggtatcccttatctcctacgtgaaataaatataccaatttatgctggaaaactcgcg
ctaggcttaattagaaacaaattggatgaacatggtttattaagaaatgctaaattatat
ccatttcaggaagatgatgttattaaattccgtaaaacttccgttagctttttccgtaca
acgcatagtatacccgattcctatggtattgttgttaaaacacctcctggtaatatcgtt
catacaggtgattttaaatttgatttcacccctgttggcgaaccggccgacataacaaaa
atggctgagataggtaaagaaggcgtactttgcttactctcggatagtacaaacagcgaa
attcctggatttacaatgtcggagaagaaagttggaggaaatataaatgatatttttagt
cgggtcgatggcagactaatatttgccacatttgcctccaatatttaccgattacaacaa
gttgtagaagctgctgtaaagcacgaccgaaaagtcgctgtatttggacgcagtatggaa
tctgctataagacttggacaggaacttggttacattcaagctccaaaaaatacgtttatt
gagccaaatcaaatcaaccgtcttcctgcttcagaggtaactattctttgtacgggatct
caaggtgaaccgatggcagctctttctcgtattgcaaacggaacacatagacagatacaa
atgatacctggtgacactgttgtattttcttcatcaccaatccctggaaacacagttagt
gtcagcaggaccattaacaaattgtatcgtggaggtgctgatgttgtccatggtccttta
actaatgttcacacatcaggtcatggaagtcaggaagagcagaaattgatgcttacgctc
atgaaaccgaagtactttatgccaattcacggcgaatatagaatgttaaaagaacatata
aaactggcagaggattgtcaagtagatccagcaaattccttcgtcatggataatggtgat
gttctagcattaggcaaggatgaagctattatagctggtaaaattccttcaggatcgata
tatgttgatggtagcggtattggcgatataggaaatatcgtgctccgcgaccgccgcatt
ttatctgaagaagggttgctaattatcgtagtcagtatcaacatgaaagaatttaaaatc
acttcaggacctgacattatctcacgtggatttgtttatatgagagaatcagaagacttg
ataaatgaagcgcaaaaacttgtttccactcacttggaaaaagtaatggaaagaaaaaca
acacagtggtctgaaattaaaaacgaaattaccgatacagtagcaccattcctttatgat
aaaacaaaacgcaggccaatggttcttccgattataatggaagtatga
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