KEGG   Virgibacillus natechei: OLD84_08315
Entry
OLD84_08315       CDS       T08602                                 
Symbol
lpdA
Name
(GenBank) dihydrolipoyl dehydrogenase
  KO
K00382  dihydrolipoyl dehydrogenase [EC:1.8.1.4]
Organism
vnt  Virgibacillus natechei
Pathway
vnt00010  Glycolysis / Gluconeogenesis
vnt00020  Citrate cycle (TCA cycle)
vnt00260  Glycine, serine and threonine metabolism
vnt00280  Valine, leucine and isoleucine degradation
vnt00310  Lysine degradation
vnt00380  Tryptophan metabolism
vnt00620  Pyruvate metabolism
vnt00630  Glyoxylate and dicarboxylate metabolism
vnt00640  Propanoate metabolism
vnt00670  One carbon pool by folate
vnt00785  Lipoic acid metabolism
vnt01100  Metabolic pathways
vnt01110  Biosynthesis of secondary metabolites
vnt01120  Microbial metabolism in diverse environments
vnt01200  Carbon metabolism
vnt01210  2-Oxocarboxylic acid metabolism
vnt01240  Biosynthesis of cofactors
Module
vnt_M00009  Citrate cycle (TCA cycle, Krebs cycle)
vnt_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
vnt_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA
vnt_M00621  Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:vnt00001]
 09100 Metabolism
  09101 Carbohydrate metabolism
   00010 Glycolysis / Gluconeogenesis
    OLD84_08315 (lpdA)
   00020 Citrate cycle (TCA cycle)
    OLD84_08315 (lpdA)
   00620 Pyruvate metabolism
    OLD84_08315 (lpdA)
   00630 Glyoxylate and dicarboxylate metabolism
    OLD84_08315 (lpdA)
   00640 Propanoate metabolism
    OLD84_08315 (lpdA)
  09105 Amino acid metabolism
   00260 Glycine, serine and threonine metabolism
    OLD84_08315 (lpdA)
   00280 Valine, leucine and isoleucine degradation
    OLD84_08315 (lpdA)
   00310 Lysine degradation
    OLD84_08315 (lpdA)
   00380 Tryptophan metabolism
    OLD84_08315 (lpdA)
  09108 Metabolism of cofactors and vitamins
   00785 Lipoic acid metabolism
    OLD84_08315 (lpdA)
   00670 One carbon pool by folate
    OLD84_08315 (lpdA)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:vnt04147]
    OLD84_08315 (lpdA)
Enzymes [BR:vnt01000]
 1. Oxidoreductases
  1.8  Acting on a sulfur group of donors
   1.8.1  With NAD+ or NADP+ as acceptor
    1.8.1.4  dihydrolipoyl dehydrogenase
     OLD84_08315 (lpdA)
Exosome [BR:vnt04147]
 Exosomal proteins
  Exosomal proteins of breast cancer cells
   OLD84_08315 (lpdA)
SSDB
Motif
Pfam: Pyr_redox_2 Pyr_redox_dim Pyr_redox Pyr_redox_3 GIDA HI0933_like FAD_binding_2 FAD_oxidored FAD_binding_3 NAD_binding_8 AlaDh_PNT_C DAO Amino_oxidase 3HCDH_N Lys_Orn_oxgnase UDPG_MGDP_dh_N NAD_binding_7 Thi4
Other DBs
NCBI-ProteinID: UZD14484
LinkDB
Position
1586822..1588228
AA seq 468 aa
MVVGDFPIELDTLVVGAGPGGYVAAIRAAQLGQKVTIVDKGALGGVCLNVGCIPSKALIQ
AGHLAEQAHGNEELGISTENVSVDFSKVQEWKGKVVNKLTSGVESLLKGNKVDILNGEVY
FVDKNTAKVMDEKDSQTYKFNNCIIATGSSPIEIPSFKFSDRVLDSTGALNLKEIPKKMV
VIGGGYVGTELGSAYANFGTEVTILEGTNEILGGFEKQMKQVVQKRLKKKGAKVITNAMA
KGVEETKDGVTVSYEVDGKEETVDADYVLVTVGRKPNTEEIGLEQVGIETDDKGLIKIDK
QSRTNIDNIYAIGDIVEGLPLAHKASYEGKIAAEVISGEKSEIDYIGMPSVAFTDPELAS
VGYTEKEAKEAGYDAKASKFPFAANGRALSLNDSDGFMKLITRKEDGLVIGAQIAGPNAS
DMIAEIGLAIEAGMTAEDIALTVHAHPTLGEITMEAAEVALGTPIHSM
NT seq 1407 nt   +upstreamnt  +downstreamnt
atggtagtaggagactttccaattgagttagacacgttggtagttggtgcaggcccaggc
ggttatgtagcagcaattcgtgcagcacaattaggtcagaaggttacaattgttgataaa
ggtgcacttgggggagtttgtttaaatgttgggtgcattccatctaaagcattaatacag
gcaggccatttagcagaacaggctcacggtaacgaagaattaggtatttcaacagagaat
gtttctgtagacttttctaaagttcaagaatggaaaggaaaagtagttaataaacttact
tctggtgttgaaagtcttttaaaagggaataaagtagacattttaaatggtgaagtatac
tttgttgataaaaacactgcaaaagttatggatgagaaagactctcaaacatacaaattt
aataattgtattatcgcaacaggctcatcaccaattgaaattccaagtttcaaattctct
gatcgtgtactggattctactggtgcactcaatctaaaagaaattccaaagaaaatggtt
gtaatcggtggtggatatgttggaactgaactaggttctgcttatgcaaactttggtaca
gaagttacgattttagaaggtacgaatgaaatacttggcggttttgaaaaacaaatgaaa
caagttgttcaaaagcgcttgaagaaaaaaggcgcgaaagtcattacaaacgcaatggct
aaaggcgttgaagaaacaaaagatggcgtaactgttagctatgaggtagacggtaaagaa
gaaacggtagatgctgattacgttcttgttacagtcggcagaaaaccaaatacagaagaa
attggcttagagcaagtaggtattgagacggacgataaaggtttaattaaaattgataag
caatctcgcacaaacattgataatatttatgctattggcgatattgtagaaggactgcca
ctggcgcataaagcatcatatgaaggaaaaattgcagcagaagtaatcagtggtgaaaaa
tccgaaattgattacatcggcatgccttcagttgccttcacagatcctgaattagcatca
gttggttacactgaaaaagaagctaaagaagctggatatgatgcgaaagcgtctaaattc
ccattcgcagccaatggacgtgcattatcactaaatgatagcgacggtttcatgaagcta
atcacacgtaaagaggatggactagttattggtgctcaaatagctggaccaaatgcaagt
gatatgatagcagaaattgggcttgcaattgaggctggaatgactgctgaagatattgct
ttaacagttcatgcccatcctaccttaggagaaattacaatggaagcagcagaagtagct
ttaggaactccaattcacagtatgtaa

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