Virgibacillus natechei: OLD84_08975
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Entry
OLD84_08975 CDS
T08602
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
vnt
Virgibacillus natechei
Brite
KEGG Orthology (KO) [BR:
vnt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vnt03032
]
OLD84_08975 (topA)
03400 DNA repair and recombination proteins [BR:
vnt03400
]
OLD84_08975 (topA)
Enzymes [BR:
vnt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
OLD84_08975 (topA)
DNA replication proteins [BR:
vnt03032
]
Prokaryotic type
DNA Topoisomerases
OLD84_08975 (topA)
DNA repair and recombination proteins [BR:
vnt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
OLD84_08975 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
Zn_ribbon_RPB9
Toprim_3
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
UZD14608
LinkDB
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Position
1721916..1723994
Genome browser
AA seq
692 aa
AA seq
DB search
MSEYLVIVESPAKAKTIERYLGKKYKVKASMGHVRDLPKSQMGVYTEDNFKPKYITIRGK
GDVLKDLRKAAKKAKKVYLAADPDREGEAIAWHLAHALNVDENSKCRVVFNEITKDAIKE
SFKNPRTIDTDLVDAQQARRILDRLVGYNISPLLWKKVKKGLSAGRVQSVALKMITDREK
EIENFKPEEYWSIEGHFQKDEESFQGAFYGLNGKKQELKSEDDVKKVINSLNEKKFSVDK
VNRRERKRNPAKPFITSSIQQEAARKLNFRAKKTMMVAQQLYEGIDLGKKAGGITGLITY
MRTDSTRISNTAKEEAETYIEDKYGKEYLGTNKQSKQQEGSQDAHEAVRPTSTLRDPKSL
KPILSRDQYRLYKLIWERFLASQMAPAVMDTMTVHLLNNDVEFRATGSKVKFKGFMKVYI
EGTDDSKKEEDKFLPDLKEGMEVEAKEIIPNQHFTQPPPRFTEARLVRTMEELGIGRPST
YAPTLDTIQRRGYASIDNKRFIPTELGTIVHELVEEFFPEIINVEFTVKMESDLDSIEDG
QIQWVKIIDDFYQDFSKRLETAEEEMEKIEIRDEPAGITCENCEHEMVYKMGRYGKFLAC
SNFPECRNTKPILKEIGVKCPKCEEGNVVERKSKKRRTFYGCDRFPECDFVSWDKPIARP
CPKCESLLVEKKSKKQTQIQCTNCDYKEKTQD
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagtatctagtaatcgtagaatcacctgcaaaagcgaaaacaattgaacgttat
ttaggaaaaaaatataaagttaaggcatccatgggtcatgtacgtgacttaccgaaaagt
caaatgggtgtttatacagaagataattttaaaccaaaatacattacaatccgcggaaaa
ggtgatgtattaaaagatctacgaaaagccgccaaaaaagcaaaaaaagtttatcttgca
gccgaccctgatagagaaggggaggctatagcttggcatttagcacacgcactaaatgta
gatgaaaattcaaaatgccgtgtggttttcaatgaaattacaaaggatgcaattaaagaa
tcatttaaaaatccgagaacaattgataccgatttagtcgatgcacaacaagccaggcga
attcttgatcgattagttggatataatatcagtccattattatggaaaaaggttaaaaaa
ggattaagtgcgggccgtgtacaatcggtagcattaaaaatgattacggatcgtgaaaaa
gaaattgaaaactttaaaccggaagaatactggtccattgaaggccattttcaaaaggac
gaagaaagttttcagggcgctttctatggtctaaatggaaaaaaacaggaattaaaatct
gaagacgatgtaaaaaaggttataaactcactaaacgagaagaaattttcggttgataaa
gttaacaggcgtgaacgaaagcgaaatcccgctaaaccttttattacatcttctatacaa
caagaggctgctcgaaagctaaacttccgcgcaaagaaaacaatgatggtagcacaacaa
ctttatgaaggtatagatttagggaaaaaagctggggggatcacaggtttaattacgtat
atgcgtacagattctacgcgaatatccaatacagctaaagaagaagcggaaacgtatatt
gaagataaatatggtaaagaatacctgggaactaataaacaaagcaagcaacaagagggt
tcacaggacgcacacgaagcagttcgtccaacatcgactttaagagatcccaaatcgtta
aaaccgatcctctccagagatcagtatcgtttatacaaactcatttgggaacggttctta
gctagtcaaatggctccggcagtgatggataccatgaccgttcatttattaaataatgat
gtggaatttcgcgcaaccggttctaaagttaagtttaaaggatttatgaaggtatatata
gaaggaacggatgatagtaaaaaagaggaagataagttcttacctgatttaaaggaaggg
atggaagttgaggcgaaagaaattataccaaatcaacattttacacagccacctccaaga
tttactgaggctagactggtacgtacaatggaggagttgggaattgggcgtccatctact
tatgctcctacgttggatacaattcagcgcagaggatatgccagtattgataacaaacga
tttataccaacagagcttggtacgattgtgcacgaattagtagaagagtttttccctgaa
attattaatgttgaatttacagtaaaaatggaaagtgatttagattccattgaagatggt
caaatacaatgggtaaaaatcatagatgatttttaccaggactttagcaaacggttggaa
acagcagaagaagaaatggaaaaaattgaaatcagagatgaacctgccggtattacttgt
gaaaattgtgagcatgagatggtttataaaatggggcgttatggtaagtttttagcttgt
tctaactttccagagtgtcgaaatacaaaaccaattctaaaagaaattggggttaaatgt
ccaaaatgtgaagaaggtaatgtagtagagagaaagtccaaaaaaagaagaactttttat
ggatgcgatcgttttcctgaatgtgattttgtatcatgggataaacctatagcgagacca
tgtccgaaatgtgagtctttgctagttgaaaagaaatcgaagaaacaaacgcaaattcaa
tgcaccaattgcgattataaagaaaaaactcaagattaa
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