Virgibacillus natechei: OLD84_09255
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Entry
OLD84_09255 CDS
T08602
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
vnt
Virgibacillus natechei
Pathway
vnt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vnt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OLD84_09255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vnt03019
]
OLD84_09255
03016 Transfer RNA biogenesis [BR:
vnt03016
]
OLD84_09255
Enzymes [BR:
vnt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
OLD84_09255
Messenger RNA biogenesis [BR:
vnt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
OLD84_09255
Transfer RNA biogenesis [BR:
vnt03016
]
Prokaryotic type
tRNA degradation factors
OLD84_09255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
SPATA25
TnsD
S1_RRP5
Thioredoxin_6
Motif
Other DBs
NCBI-ProteinID:
UZD14662
LinkDB
All DBs
Position
1774120..1776234
Genome browser
AA seq
704 aa
AA seq
DB search
MSEAKQVFSTEIAGKKFSVEIGELAKQANGACMIHYGDTSVLCVATASKEPKDLPFFPLT
VNYEERLYAVGKIPGGFIKREGRPSEKATLTSRLIDRPIRPLFPDGFRNEVQVISTVMSV
EQDNPSDIAAMIGSSIALSISDIQFAEPIAGVKVGRVDGEFIINPGIEQEEKSDIALTVA
GTKDAINMVEAAAEEVPENIMLDAIMFGHEEIKRLVAFQEEIVQAVGVEKSSVTLFEPDE
EIATNVEQKAKDKLAAAIQVFEKHEREEAITKVKDETLEQYAEEEPEVIKQVKSVLDHMT
KEEVRRRITKEKLRPDGRKIDEIRPLSSRINVLPRTHGSGLFTRGQTQALSICTLGALGD
VQILDGLDLEESKRFMHHYNFPQYSVGETGPIRGPGRREIGHGALGERALEQVIPSDKEF
PYTIRLVSEVLESNGSTSQASICASTLAMMDAGVPIKAPVAGIAMGLVKSGDDYSILTDI
QGMEDALGDMDFKVAGTENGVTALQMDIKIDGLSKEILEEALNQAKIGRIQILDSMLATI
EEPKTQLSEYAPKILTMNINPDKIRSVIGPSGKQINQIIDDTGVKIDIEQDGGVFISSTD
ASMNEKAKKIIEDLVREVEVDQMYLGTVKRIEKFGAFVEIFKGKDGLVHISELAEERTNK
VEDVVSIGDEIMVKVKEIDHQGRVNLSRKAVLKEEQEKQKQAES
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaagctaaacaagttttttcaacagaaattgctggaaaaaagttttctgtcgaa
ataggagaactggcaaaacaagcgaatggagcatgtatgatacactatggagatacatcg
gtattatgtgtagcaacagcttcaaaagagccaaaggatttgccgttttttccattgacc
gtaaactatgaagaacgcttatatgcggttgggaaaattccagggggcttcattaaacgg
gaaggaaggccaagtgagaaagcaacgttgacttcacgcttaattgatcgccctattcgt
ccattattcccagatggttttagaaatgaggtacaagtaatcagtactgtcatgagtgtt
gaacaggataatccatcagacattgctgcaatgattggatcatcaatcgctttaagcatc
tccgatattcagtttgctgaacctatagctggtgttaaagttggacgagttgacggagaa
ttcattatcaaccctggtattgaacaagaagaaaaaagtgatattgcgttaacagtagct
ggtacaaaagatgccattaatatggtagaagctgcagcagaggaagtacctgaaaacatt
atgcttgatgctatcatgtttggccacgaggaaattaaacgtctcgttgcatttcaagag
gaaatagtacaggctgtaggtgttgaaaaatcatctgtgacgttatttgaaccagatgaa
gaaatagctactaacgtagagcaaaaagcaaaagataaattggctgcagctattcaagta
tttgaaaaacatgaaagagaagaagctattacgaaagtgaaagatgagacactagaacag
tatgcggaagaagaaccagaagttattaaacaagtgaaatctgttctggatcatatgact
aaagaagaagtacgtcgtcgtatcacgaaagaaaaacttcgtcctgatggtcgtaaaatc
gatgagattcgtccattgtcatcaagaattaatgtattgccaagaacgcatggatctggc
ttgtttacacgcggacaaacacaagcgcttagtatctgtacacttggagcattaggggat
gtacagattttggatgggttggatcttgaggagtccaaacgctttatgcatcattataat
ttcccccagtatagtgtcggtgaaacaggacctattagagggccaggtcgtcgagaaatt
ggacatggagcattaggcgaacgagcgcttgaacaagttattccttcagataaggaattt
ccgtacaccatacgtttagtatcagaagtattagaatcaaacggttctacatctcaagca
agtatatgtgctagtacactcgctatgatggatgcaggggtacccattaaagcacctgtt
gcaggtattgccatgggacttgtcaaatcaggagatgactattctattttaactgatatt
caaggcatggaagatgctttaggtgatatggactttaaagttgcaggtactgagaatggt
gtaacagctctacaaatggatataaaaatcgatggcttatcaaaagaaattttggaagaa
gcattaaatcaggctaaaattggccgtatacaaatcttagattcaatgctcgccacaatt
gaagaaccaaaaacacagctttctgaatacgcacctaagattttaacaatgaacattaac
cctgataaaatccgatctgttattgggccgagcggtaaacagattaatcaaattattgat
gatacaggagttaaaattgatattgagcaggatggcggtgtctttatttcgtcaacagat
gcttctatgaatgagaaggctaaaaagattattgaagatcttgtgagagaagttgaagtt
gatcaaatgtatttgggaactgtaaaaaggattgagaaatttggagcctttgtagaaata
tttaaaggcaaggatggtctcgttcacatttctgagttggcagaagaacgcacaaataaa
gtggaagatgttgtatccatcggtgacgaaataatggttaaagtgaaagagattgatcat
caaggtcgcgtgaatctttcccgtaaagcagttctaaaggaagagcaagaaaaacagaaa
caagctgagtcatag
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