Virgibacillus natechei: OLD84_10320
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Entry
OLD84_10320 CDS
T08602
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vnt
Virgibacillus natechei
Pathway
vnt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vnt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OLD84_10320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vnt03019
]
OLD84_10320
03400 DNA repair and recombination proteins [BR:
vnt03400
]
OLD84_10320
Enzymes [BR:
vnt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OLD84_10320
Messenger RNA biogenesis [BR:
vnt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OLD84_10320
DNA repair and recombination proteins [BR:
vnt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
OLD84_10320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Helicase_C_2
TniB
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UZD11365
LinkDB
All DBs
Position
complement(1972797..1974329)
Genome browser
AA seq
510 aa
AA seq
DB search
MSTRHILEEKLKTHFNYTSFRLGQKAIIEDVMSGKDVLGVLPTGSGKSICYQLPATLLDG
VTIVVSPLISLMIDQVKELKAFHFKKVVALNSFMSPTDRKLVFDNLHTYKLIYISPELLQ
KEEVLGRLRQLHISLFVIDEAHCISQWGHEFRPDYLKLNSIIRTLKKPSILALSATATPA
VQQDIISALNTPSITKHVHPMDRDNISFSVERVMDDKEKQSTIINLLSHYNVATLIYFSS
RQATEDTAKILSEKLASKRIAYYHGGMEQGDRITIQQQFMNDQLDIICCTSAFGMGINKD
NIRLVIHFHLPLQIESYIQEVGRAGRDGETSASLLLFSEKDIYLPKNMIKSELPSFEDLK
VVFQQLQNLYKAGDQLPKNGAENLFQISETQWRFLQYQFEKHGMIEGNNIIFHEENWRQA
FQWINNHRAERTLLKENKLREMLQWIHESECLRKHLYKSFQSSYNKPKYQCCSNCGFSFT
NWKPKQKNIKAIPEGTWESKLKNLLLIGEE
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgagtactcgacatatattggaagaaaaactaaaaactcactttaactatacatcgttt
cgattagggcaaaaagcaattattgaagatgttatgtcaggaaaagatgttcttggtgta
ctgccaactggttcaggtaaatcgatttgttatcagctgccagcaacactgttagatggt
gttacgattgtggtttcacctttaatttctttaatgattgatcaggtgaaagaattaaaa
gccttccatttcaaaaaagttgtcgccctgaacagttttatgtcacctaccgacagaaag
ctcgtatttgataacctgcatacatataagttaatctatatttctcctgaactcctacaa
aaagaagaagtgttgggacgtctgcgtcagttgcatataagcttatttgttattgatgaa
gcccattgcatatcacaatggggacatgaatttcgaccggattatttaaagttgaacagc
attattagaactttaaaaaaaccatccatattagccttaagtgcaacagccaccccagct
gttcaacaagatattatttctgcgttaaacacgcccagcatcacgaaacatgtgcatcca
atggacagagacaatataagcttttctgtagaacgggtaatggatgataaagagaaacaa
tctacaataattaacttgctgtctcattataacgttgcgacactcatttatttttcaagc
agacaagccactgaagatacagcaaaaattcttagtgaaaaactagcttccaaaagaatt
gcatattatcatggtgggatggaacaaggtgaccgtattaccatacaacagcaatttatg
aacgatcaattagatattatatgttgtacaagtgcatttggaatgggaataaataaagat
aatattcgtttggtaattcatttccatctccctttacaaatagagtcctatattcaggaa
gttggtagagctggaagagatggagagacaagtgcaagtttattgcttttttcggagaaa
gatatctaccttccaaaaaatatgataaaatcagaacttccatcatttgaggatttaaaa
gtagtctttcaacaattacaaaatctatataaagctggtgatcaacttccaaagaatggt
gctgaaaatttatttcaaataagtgaaacacaatggcggtttttacagtatcaatttgag
aaacatggtatgattgaaggaaataatattatttttcacgaagaaaattggagacaggcg
tttcaatggataaataaccatagggctgaaagaacattgctaaaagaaaataaattacga
gaaatgctgcaatggatacatgagagtgaatgtctaagaaagcatttatataagagcttt
caatcctcctacaataaaccgaaatatcaatgttgcagcaattgtgggttctcattcact
aactggaaaccaaaacagaagaatataaaagcaattcctgaaggtacatgggaaagtaaa
ttgaaaaacctattattaattggagaagaataa
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