Virgibacillus natechei: OLD84_12005
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Entry
OLD84_12005 CDS
T08602
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vnt
Virgibacillus natechei
Pathway
vnt03030
DNA replication
vnt03430
Mismatch repair
vnt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vnt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OLD84_12005 (dnaE)
03430 Mismatch repair
OLD84_12005 (dnaE)
03440 Homologous recombination
OLD84_12005 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vnt03032
]
OLD84_12005 (dnaE)
03400 DNA repair and recombination proteins [BR:
vnt03400
]
OLD84_12005 (dnaE)
Enzymes [BR:
vnt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
OLD84_12005 (dnaE)
DNA replication proteins [BR:
vnt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
OLD84_12005 (dnaE)
DNA repair and recombination proteins [BR:
vnt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
OLD84_12005 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
UZD11676
LinkDB
All DBs
Position
complement(2298655..2302002)
Genome browser
AA seq
1115 aa
AA seq
DB search
MSYTHLQVRSGYSLMNSTITIDKLVQRASELEFDALALTDEQVLYGAIPFYKACQNYKIK
PIIGMVVYTTDEEQENIPCIFLAKNKNGYQSLVKISTHIQHRKNTNIAIEELRVYVEDLI
CIIPVHNTKIATLLDTQNHDKVVDYITTWKHLVHEGDFYLGIQDHGLESERHIHRSLKAF
HDKYHIPVVAIQDVRYIHQSDDSAYDCLQAMKQGNTWNMRITDPDRKERFLRSAFEMEQL
FSNFWPEVIEESEAIKQKCNVTFDFDQRMIPAYPVPQQMSAHAYLEKICWTNVETKYEEV
TEEVSNRLTYELTVIQSMQFSDYFLIVSDFIGYAKDNRIVVGPGRGSAAGSLVAYVLGIT
DVDPIKYDLLFERFLNPERLTMPDIDIDFSDVRRDEVIEYVRNKYGNEHVAQIITFGTFA
ARSLVRELIKTMDIDQQDANFILRHIPVQARKSIVDLAKESEDLKNYIKQSDSLKVLFAI
SIKLEGLPRHVSTHAAGIVISEKPLMEHIPLTTGTNETNLTQFPMNDLEELGLLKIDLLG
LRNLTLLEKTIQSITFTRNQSVSLTNLPKNDAKTYELLQKGETNGVFQLESNGMKNVLTQ
LKPSSFEDIVAVNALFRPGPMDNIPTYINRKHGKENVVYPHPDLAPILEKTYGVLVYQEQ
IMQIANQIAGFSLGKADILRRAVSKKQQDVMDEQKEAFINGCLANGYDKSVAEEIFAWIV
KFSNYGFNRSHAVAYSEISYQLAYLKAHYPANFFAELLSSFVSQQDKTNDYIKEAKNLNL
SIAPPSINKSFGKFSVEGNQIRMGLIMIKGIGNQVIKEVIKVRKEGLFKNLFDFCLRVSL
KTVNRAALELLIMAGAFDETYSNRASLLASIDHAIEQGELFREFNDQPGLFRDQIAARYI
DIEDFSLVKKLADEKELLGIYVSSHPLKEHRKKLRENGYVSMKQAQALIGKKNCKSVAIV
QSIKPIRTKRGDAMAFITISDETGDMEAVVFPEIYRDVNRWLKEEMVVLLTGKIESRNNR
VQWQLSQVKEFDEEELETRNNQRLFIKLTQKNNQNAWKEIKKVTRLYPGNIPIIIYDEQN
RKTFQLTGDYFITPERACIQALSDHFGKDNVVFEK
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtatacacatttacaggtgagaagtggttatagcctgatgaatagtaccattaca
atcgataaattagtacaaagagctagtgaattagaattcgacgcattggcacttacagat
gagcaagtactatatggtgctattcctttttataaagcttgccaaaattataaaataaaa
ccgattattggtatggttgtatatacaacggatgaagagcaggagaatattccgtgcatt
tttctagcaaaaaataaaaatggatatcagtcacttgttaaaattagtacacatattcaa
catcgtaaaaatacgaatattgctatagaagaactgcgtgtgtatgtagaagatctgatt
tgtatcataccagttcacaatacgaagattgcaaccttattagatacccaaaatcacgat
aaagtggtggattacataaccacatggaaacatctggtgcatgaaggggatttttactta
ggtatccaagatcatgggctcgaaagtgaacgtcatatacatagatcactaaaagcattt
catgacaagtatcatattcctgtagtagcgatccaggacgtacggtatatacatcaatca
gatgatagtgcctatgattgtttgcaggctatgaaacaaggaaatacttggaacatgcgg
attacggacccagacagaaaggaacgctttttacgctccgcttttgaaatggaacagtta
ttctccaatttttggccggaagtaatcgaagaatcagaggcaattaaacaaaaatgtaat
gtaacatttgattttgaccagcgcatgattcctgcttaccccgtaccacaacaaatgagt
gcacatgcttatttagaaaagatttgctggacgaacgtagagacgaaatatgaggaagtt
acagaagaggtttcgaatcgtttaacatatgaactaacggttattcaatcgatgcaattc
agcgattatttcctaattgtttctgattttataggttatgcaaaagataatcgtattgta
gtcggtccgggtagaggttctgctgctggttcgctggttgcgtatgttttaggaattaca
gatgtggacccaattaaatatgacttgctgtttgagcgttttcttaatcctgaacgatta
acgatgccagatatagacattgatttttcggatgtaagacgtgatgaggttattgaatat
gtacgaaataaatacggaaacgagcatgtagcgcagattataacatttggcacatttgct
gcacgttctttagttcgggaattaataaagactatggatattgaccaacaggatgcgaat
tttatcctgaggcatattccggtacaagcgaggaaaagtattgttgatcttgcgaaggaa
tcagaggacttaaaaaactatattaagcaatcagacagcttaaaggtattatttgctatc
tcaattaaattggaaggattaccaaggcatgtctccacacatgctgcagggattgttatt
agtgagaaaccgttaatggaacatattccactgaccaccggaacaaatgaaacaaattta
acacaatttccgatgaatgatctggaggagcttgggttattaaaaattgatttacttggt
ttacgcaacctgacattacttgaaaaaacgatccaatctataacattcaccaggaatcaa
tcagtatcattaaccaatcttccgaaaaatgatgcgaaaacatacgaactattacaaaag
ggggaaacaaatggtgtttttcaattagaatcaaacgggatgaagaatgtacttactcaa
ttaaagccttcttcatttgaagacattgtagccgtaaatgctttgtttcgtcctggtcca
atggataatatcccaacttatataaatcgtaaacatggaaaagaaaatgtcgtatacccg
catccggatttagcacctattttagaaaaaacatacggtgtgctcgtttaccaagaacaa
atcatgcagattgctaaccagatagcaggtttttcacttggtaaagcagatatattacgc
cgtgctgtaagtaagaaacagcaggatgtcatggatgagcaaaaggaagcgtttataaac
ggttgcttagcaaatggctatgacaaatcggttgccgaagaaatattcgcctggattgtg
aagttttccaactatggtttcaatcgaagccatgcagtagcgtatagtgagatttcctac
caattagcgtacttaaaagcacattacccagcaaatttctttgcagagttacttagttct
ttcgtaagtcaacaggataaaacaaatgattatatcaaagaagcaaaaaacttaaatctt
agtattgcgccgccctccattaataaaagtttcgggaaattttcggtggaaggtaatcag
atacgaatgggccttatcatgattaaaggaatcgggaatcaagtaatcaaggaagtaatc
aaggttcgtaaggaaggtttatttaaaaatttatttgacttttgtttacgagtttcattg
aagactgttaatcgagctgcattggaacttcttatcatggcaggggcatttgatgaaacg
tattcaaacagggcaagcctcctggcctccattgatcatgcgatcgaacaaggagagttg
tttagagaattcaatgaccaaccgggattgtttcgagatcaaattgcagcaagatatata
gacatcgaagactttagcctggttaaaaaattagcagatgaaaaagaactgctggggatt
tatgtatccagtcacccgctaaaggaacaccgcaaaaagctaagagaaaacggatatgtt
tccatgaagcaggcacaagctttaattggcaaaaagaattgtaaaagcgtggcaattgtt
caaagcattaagccaatccgcacaaaacggggagatgcaatggcttttatcacgattagt
gacgagactggtgacatggaagccgttgtttttcctgaaatttaccgagatgtaaacagg
tggctgaaagaagaaatggtcgtgctgttgactggaaaaattgaatcaagaaacaatcgt
gttcaatggcaactatcgcaggttaaagaattcgatgaagaagaacttgaaacacgtaat
aatcagcgtttgtttattaaattaacccagaagaataatcaaaatgcttggaaggaaatt
aaaaaagttacacgtttatatccaggtaacatacctatcattatttatgatgagcaaaac
agaaagacattccagcttacgggtgactactttatcactccagaacgagcgtgtatacaa
gcactatcggaccattttggtaaagataatgtggtttttgaaaagtag
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