Virgibacillus natechei: OLD84_17260
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Entry
OLD84_17260 CDS
T08602
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
vnt
Virgibacillus natechei
Pathway
vnt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vnt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OLD84_17260 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vnt03021
]
OLD84_17260 (rho)
03019 Messenger RNA biogenesis [BR:
vnt03019
]
OLD84_17260 (rho)
Transcription machinery [BR:
vnt03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
OLD84_17260 (rho)
Messenger RNA biogenesis [BR:
vnt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
OLD84_17260 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
AAA_22
AAA
Mor
ATPase_2
Spore_III_AA
AAA_25
AAA_24
Motif
Other DBs
NCBI-ProteinID:
UZD12622
LinkDB
All DBs
Position
complement(3443891..3445171)
Genome browser
AA seq
426 aa
AA seq
DB search
MAALTISHLETLTLKEIYALAKEYKVSYYSKLTKRELIFAILKGQAEQDGFLFMDGVLEI
IPSEGFGFLRPINYSPSAEDIYISASQIRRFDLRNGDKVSGKVRPPKENERYYGLLHVDA
VNGMDPDTSKERVHYPALTPLYPDRLMRLETEDRKVSSRIIDLMTPVGFGQRGLIVAPPK
AGKTMLLKEIANSVSKNHPDSKLIILLVDERPEEVTDIERSVHPDVDVVSSTFDEVPESH
IKVSELVLERAMRLVEHKRDVIVLMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKR
FFGAARNIEEGGSFTILATALVDTGSRMDDVIYEEFKGTGNMELHLDRNLAERRIFPAID
ILRSSTRKEELLVEKSKLDKMWAIRKTMQDSNEFLERFLRRLKASKTNEEFFQQMDEEMK
RKGTKR
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atggctgcattaacaatctctcatttagagacattaacattaaaggaaatatatgcatta
gcaaaagaatacaaagtatcctattactcaaaattaacaaaaagagaactcatatttgct
attttaaaaggacaagctgaacaagatggttttttatttatggatggggtactggaaatt
attccatcagaaggatttggttttctaagaccaattaattactctccgagtgcagaggat
atttatatttctgcctcacaaattcgtaggtttgacctccgtaatggggataaagtttcg
ggtaaagttcgcccaccaaaagaaaatgaacgctattatgggctgttgcatgtggatgct
gtaaacggtatggatccagacacatccaaggagcgtgtccattatcctgcattgacacca
ttgtatcccgaccgtttgatgcgtttggaaacagaagatagaaaggtatcatcacgcatt
atcgatttgatgactccagtcggatttgggcagcgtggattaattgttgcgccgccaaaa
gctggtaaaacaatgctgttgaaagaaattgctaacagcgtttcaaaaaatcacccagat
tcaaaactgatcattttacttgttgatgagcgaccagaagaagttacagacattgaacga
tccgtccatcctgatgttgacgttgtaagttcaacgtttgacgaggttccagaaagccat
atcaaagtatcagaactagtattggaacgagcaatgcgtttagttgagcataaacgtgac
gttattgtcttaatggatagtattacaaggttagctcgtgcatacaacttagttattccg
ccgagcggtcgtactttatccggtggtattgatccggcagcttttcaccgtccaaaacgg
ttctttggtgcagcacgtaacattgaagagggcggaagctttaccatcctggcgacagca
ttagtagatacaggctcgcggatggatgacgtcatttatgaggaattcaaaggaacagga
aacatggaattgcacctggaccgtaatctggcagaacgccgaatctttccagcaattgat
atcttacgttccagtacccgtaaagaagaattgctcgttgagaaatccaaacttgataaa
atgtgggcaattcgtaaaacaatgcaggattcaaatgagttcctcgaacgcttcctaaga
cgattaaaagcatctaagacaaatgaggaatttttccagcaaatggacgaggaaatgaaa
cgtaaaggaacaaagaggtag
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