Virgibacillus natechei: OLD84_17555
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Entry
OLD84_17555 CDS
T08602
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
vnt
Virgibacillus natechei
Pathway
vnt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vnt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OLD84_17555 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vnt03019
]
OLD84_17555 (recQ)
03400 DNA repair and recombination proteins [BR:
vnt03400
]
OLD84_17555 (recQ)
Enzymes [BR:
vnt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OLD84_17555 (recQ)
Messenger RNA biogenesis [BR:
vnt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OLD84_17555 (recQ)
DNA repair and recombination proteins [BR:
vnt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
OLD84_17555 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HTH_40
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
Motif
Other DBs
NCBI-ProteinID:
UZD12679
LinkDB
All DBs
Position
3514236..3516389
Genome browser
AA seq
717 aa
AA seq
DB search
MTVKEEKILQTYFGYESFRPGQKETIDHISQLNNTLAVMPTGGGKSLCYQIPGLSLDGTA
IIISPLISLMKDQVDALYSYGIPATYINSSLSTSEQQTRLKDIAANRYKFVYVAPERFES
MAFVNTIKNIPLALVAFDEAHCISQWGHDFRPSYRSIVPNLKKLSNIPVFVALTATATEE
VISDIKNLLHIETNHVVNTGFERKNLSFHIVKGKDKSTYVRSFLEEHKDESGIIYTSTRK
QADSLYEQLTKRGVTVAKYHAGLSEDERKQAQAAFIHDEKSIMIATNAFGMGIDKSNVRY
VIHYAMPMNIESYYQEAGRAGRDGEPSDCILLFSPQDIQLQKFLIEQSLMDDASKQQEYR
KLQAMINYCHTHGCLTTQILDYFNDTVTHETCGRCSNCVERQERTDITEEAQMILSCVKR
MGERFGVGMTAKVLKGSKDKKIKDFRLDQISTYGILSAYTEKGLTEWIHFLIAEQLLATE
EGKFPTLKLNQNSIEVLKGKHSVWMFTAPIPVSEEADYQETLFNELRALRKQMADEKNVP
PYVLFSDVTLKELSRYFPVTKEDMLEIKGIGEKKYDQYGEAFLAVIQKWRENNPDVKKKI
RIADTPAPAPKPKQRKTDDDRPSHMVSYQMFQSGKTLKDITVIREFSQQTIENHLFKAFK
EGYPIAWGIFFNEEEEAAVMAAREEIDEPRLRPLKEALPEEYNYTMIKAVLVKNELM
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgactgtaaaagaagaaaaaattctgcaaacctattttggctacgaatcgtttcgcccc
gggcaaaaagaaacaatcgaccacatatcacaattaaataacacacttgctgttatgcca
acgggcggcggcaaatccttatgctaccaaattcctggcttatctttggatgggacagca
atcattatctccccgttaatttcacttatgaaagaccaggtggatgctctttattcatac
ggaattcctgctacatatattaatagctccctatcaacaagtgaacagcaaacacgacta
aaggacattgctgcaaatcgctataaatttgtttatgttgcacccgagcgttttgaatcg
atggcatttgtaaatacgattaaaaatattccgcttgcacttgtagcttttgatgaagca
cattgtatttcacaatggggacacgattttagaccaagctaccgttccatcgtccctaat
ttgaaaaaattatcgaatatcccagtttttgtcgcattgactgccacggcaacagaagaa
gttatttcagacatcaaaaatttgttgcatattgaaacaaatcatgtcgtcaatacggga
ttcgagcgaaaaaatttatcttttcacattgtaaaaggaaaggataaatcaacgtatgtg
cgttcttttttagaggaacataaagacgagtcgggaattatttatacctcaacaagaaag
caagctgattctctatacgaacagcttacgaaacgtggtgttacagttgcgaaataccat
gccggtttatccgaggatgaacgtaaacaagcacaagctgccttcattcatgatgaaaaa
tctatcatgatcgcgaccaatgctttcgggatgggaatcgataaatcgaatgtacgatat
gttatccattacgccatgccaatgaatattgaatcctattatcaggaggctggaagagct
ggtcgtgacggagaaccgagtgattgtattcttttattctccccacaggacattcaatta
cagaaatttttaatcgaacagtcactaatggatgatgcttctaaacaacaggaataccgt
aaattacaggccatgattaattactgtcatacccatggctgtttaacaacacaaattctg
gattactttaacgacacggtcacacacgaaacatgtggacgctgcagtaattgtgtggaa
cgtcaggaacgaacggatattaccgaagaagcacagatgatcctgtcttgcgtcaagcgg
atgggcgaacgctttggtgttggaatgaccgccaaagtgttaaaagggtccaaggacaaa
aagataaaggattttcgcttagaccagatttctacttatggcatattgtctgcttatacg
gaaaagggcttgacagaatggatccattttctaattgcggaacaattactcgcaacggaa
gaaggaaagtttccgactttaaaattgaatcaaaattcgatagaggtactaaaaggaaag
cattctgtctggatgtttactgcccccattcctgttagtgaagaagctgactatcaagag
actttattcaacgaattacgggcattacgaaagcaaatggctgacgagaaaaatgttcca
ccatatgtgttattttccgatgtaacattaaaggaattaagccgttattttccagtaaca
aaggaagatatgctggaaatcaagggtattggagagaagaaatatgaccaatacggggag
gcattcctagctgtaatccagaaatggcgagagaacaatcccgacgtgaagaagaagatt
cgaatcgctgatacaccagcgccagcacctaaaccgaagcagcggaaaacggatgacgac
agacctagccatatggtgagctatcagatgtttcaatctggtaaaacccttaaagatatt
acagtcattcgggagttttcccagcaaacaattgaaaatcatctttttaaagcattcaag
gaaggatacccaatcgcatggggaatcttttttaatgaggaagaggaagctgctgtcatg
gcagcacgtgaagaaatcgatgagccacggttgaggccattgaaagaggcattgcctgag
gagtataattatacgatgattaaggctgttttggttaagaatgagttgatgtag
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