Virgibacillus natechei: OLD84_18820
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Entry
OLD84_18820 CDS
T08602
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
vnt
Virgibacillus natechei
Pathway
vnt02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
vnt00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
OLD84_18820 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vnt03021
]
OLD84_18820 (rpoD)
Transcription machinery [BR:
vnt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
OLD84_18820 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Sigma70_r4_2
GPW_gp25
Tc-R-P
DUF7785
TBD
DUF7645
Motif
Other DBs
NCBI-ProteinID:
UZD12907
LinkDB
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Position
complement(3767134..3768255)
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AA seq
373 aa
AA seq
DB search
MTGNNAVQEKDNQREVALEQVKDKLLDLGKKQGALTYEEVARWLSDFELESDQIDEWYEY
LDNQGIEVVVNVEEDPESQETAKEVEHDAADLSNLTGMETNDTVRMYLKEIGRTDLLSAD
EEVHLARRIEEGDHVAKERLTEANLRLVVSLAKHYTGRGLQFLDLIQEGNTGLMKAVEKY
DYRKGFKFSTYATWWIRQSITRAIADQSKTIRKPVHMVETINKLTRVQRELLLKLGHEPT
PEEIAKEMDLPLEKVYHVLRLTQDTVSLEKPIGEEEGSYLGDFIEDQETPSPSDQATYAS
LKEQLETILDTLTDREENVLRLRFGLDDDHSRTLEEVGRVFDITRERIRQIESKALRKLR
HPSRSKWLKDFLE
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atgactggaaataacgccgttcaagaaaaggacaatcaaagggaagtagcacttgaacag
gttaaagataaattgcttgacttaggaaagaagcagggcgcgcttacgtacgaagaagtg
gcccgctggttatcggattttgaattggaatctgaccagatagatgaatggtatgagtac
ctggataatcaaggtattgaggtggttgtaaatgttgaagaagaccctgaatctcaagag
actgcaaaagaagtggaacatgatgcggctgatttaagtaacctgacagggatggaaacc
aatgacaccgttcgtatgtatttgaaagaaattggcaggactgatttattgtcggctgat
gaagaagtccatttagcccgtcggattgaggaaggagatcacgtagctaaagagcggctg
acagaagccaatcttcgtcttgttgtcagcctggcgaagcattacacggggagaggcttg
cagtttttggatttaattcaggagggcaatacagggctcatgaaggcagtggagaaatat
gactaccgtaaaggttttaaattcagtacgtatgctacttggtggatacgtcaatcaata
acacgggctattgcggatcaatcaaaaaccatacgtaaacctgtccatatggtggaaacc
attaataaattgactcgcgtgcagcgtgaattgttgctaaagcttggtcacgaacctact
cctgaagagattgcaaaagaaatggatcttccacttgaaaaagtgtatcacgttttaagg
cttacgcaagacactgtttcacttgagaagccaataggagaggaagagggttcctattta
ggtgactttattgaagatcaagaaacaccctctccatctgatcaagccacttatgcatca
ttaaaagaacaattggaaacgatattggatacactaacggatcgggaagagaatgtatta
cgacttcgcttcggacttgatgatgatcattcgcgtacccttgaagaagttggtcgagtt
tttgatataacgcgggagagaattcgtcaaatcgaatccaaagcattacgcaaactccgg
catccaagtcggagtaaatggttgaaggactttttagaataa
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