Vibrio navarrensis: IF132_02885
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Entry
IF132_02885 CDS
T07785
Symbol
rnb
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
vnv
Vibrio navarrensis
Brite
KEGG Orthology (KO) [BR:
vnv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vnv03016
]
IF132_02885 (rnb)
Enzymes [BR:
vnv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
IF132_02885 (rnb)
Transfer RNA biogenesis [BR:
vnv03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
IF132_02885 (rnb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
DUF7716
Motif
Other DBs
NCBI-ProteinID:
QOD68428
LinkDB
All DBs
Position
2:complement(652781..654778)
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AA seq
665 aa
AA seq
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MFQDNPLLAQLKQQIQENLPKKEGTIKATEKGFGFLEVDSTTSFFIPPAYMKKCMHGDKV
IAIIRTENEREVAEPQELVEQSLNRFIGRIKMFKGKLNVAPDHPQLKKMSLKAKVKKGLK
SDDFAEGDWVVAHLVRHPLKDENGFFVEISEKITDANDKIAPWWVTLAENDLPNSEPAGI
EHWEIKDDADLQRIDMTHVPFVTIDGESTKDMDDALYAKKNAAGDFELTIAIADPTAYIT
PDDEMDKVARERGFTIYLPGRNIPMLPRDLADELCSLIEGEIRPALCCTVTVSKDGVIGD
DIRFFAANIKSHARLAYDNVSDWLENGVSEKWQPSEEIATIVRDLYDFSLARAQWREEHA
VVFPDRPDYRFELSEDNDVIAIHADSRRSANRLVEESMITANICAGRTLQAHFGTGVFNC
HSGFKAEKLADAVELVNPDGTLPFTSESLATLQGFAALRRWLCQQESTYLDNRIRKFQTY
SEVSNQPLPHYAMGLDIYATWTSPIRKYGDMINHRMLKALILNKEPVQKPDDTVGDELAL
HRKHHKIAERNVADWLYARTLADEPAKETRFHGEIFDINRAGMRVRLLENGAAAFIPGAL
IVDNKDRIECNGDAGTISIDKELVYKLGDVLEVVLTEVNQENRSLVARPTAVFAELPVAE
AIQGE
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataatccactactcgcccaacttaagcagcaaattcaagaaaatctgcct
aagaaagagggaaccatcaaggcaaccgaaaaaggtttcggttttctcgaagtcgacagc
acaaccagtttcttcatcccgccggcttacatgaaaaaatgtatgcacggtgacaaagtg
attgccatcatccgcacggaaaacgaacgtgaagtcgccgagcctcaagagttggtggaa
caatcactcaaccgttttattggccgcatcaaaatgttcaagggcaagctcaacgtcgcg
cctgatcatccgcagctgaaaaaaatgtcactgaaagccaaagtgaaaaaagggctgaaa
agtgatgacttcgccgaaggtgactgggtggttgcccatcttgtacgtcaccctctgaaa
gatgaaaacggcttctttgttgaaatctcagaaaaaatcaccgatgccaatgacaaaatc
gccccgtggtgggttacgttggccgaaaatgatctaccaaattcagagcctgcgggcatt
gaacactgggaaatcaaagacgatgcggatctgcaacgcatcgacatgacacacgtgcca
tttgtcacgattgatggcgagtcgaccaaagatatggacgatgccttgtatgcgaagaaa
aacgccgcaggggattttgaactgaccatcgcaatcgctgacccaactgcgtacattaca
ccagacgatgagatggacaaagtcgcgcgcgaacggggcttcaccatttatctgcctggg
cgcaacattccgatgttgccacgcgatctggccgacgagctatgttcgttgatcgaaggt
gaaattcgccctgccctttgctgcacggttaccgtgtcgaaagatggcgtgatcggcgat
gacattcgtttctttgctgccaatattaaatcgcatgcccgtctggcctatgacaacgtc
tctgattggttagaaaacggcgtatcggaaaaatggcagccaagcgaagaaatcgcaacc
atcgttcgcgacttgtacgatttttcgctggcacgcgcacagtggcgtgaagaacacgcg
gtcgtcttcccagacagaccggattaccgcttcgaactcagtgaagataacgatgtgatc
gcgattcatgccgactcacgccgcagcgccaaccgtttggttgaagagtcgatgatcacc
gccaacatctgtgcaggtagaactttgcaagcgcactttggtacaggcgtattcaactgc
cattctggcttcaaagcagaaaaattggctgatgcggttgaactggttaatcccgacggc
accttacctttcaccagtgaatcgttagccaccctgcaaggctttgctgcactacgtcgc
tggctgtgtcagcaagagagcacttacctcgacaaccgtattcgcaagttccaaacctac
agtgaagtgagcaaccaaccactgcctcactacgcaatggggctagatatttacgcgact
tggacctctccgatccgtaagtatggcgatatgatcaaccaccgtatgcttaaagcactg
atccttaataaagagccagtacaaaaacctgatgataccgtcggtgatgagttggctctg
catcgtaaacatcacaagattgctgagcgcaatgtcgcggattggctctacgcgcgcacc
ttggccgacgagccagcgaaagaaactcgcttccatggggaaatctttgacatcaaccgc
gcgggcatgcgtgttcgtttgctagagaatggcgcggccgccttcattcctggtgctctg
attgtcgacaataaagaccgcattgagtgcaatggtgatgcgggaacaatctccatcgat
aaagagctggtttacaaactgggcgatgtgttggaagtggttcttaccgaagtcaaccaa
gaaaaccgcagtttggtcgccagaccaactgccgtgtttgccgaattgccagtcgctgaa
gcaatacaaggcgaataa
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