Vibrio navarrensis: IF132_03800
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Entry
IF132_03800 CDS
T07785
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vnv
Vibrio navarrensis
Pathway
vnv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vnv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IF132_03800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vnv03019
]
IF132_03800
Enzymes [BR:
vnv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IF132_03800
Messenger RNA biogenesis [BR:
vnv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IF132_03800
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
P-loop_SecA
Helicase_RecD
HEM4
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QOD67565
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All DBs
Position
2:887688..888950
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AA seq
420 aa
AA seq
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MTAKFIELGLEPALSDTLSELGFSTPTPVQQQAIPHVLAGRDVLAGAQTGTGKTAAYGLP
LIQMLSASHVNTEEERGTPRALVVVPTRELAQQVFDNLSQYAKHTSLKIVTVYGGTSINV
QVKNLANGVDILIATPGRLLDHLFTRKTTLVNAQLLVLDEADRMLDMGFLPDIQRILKRM
PEARQTLLFSATFDTRIKALAYRLMKEPVEIQVATANSTAEKVRQVVYPVDKKRKSELLA
YLIGSRNWQQVLVFTKTKQGSDQLVNELKLDGIKAASINGDKAQGARQKALDDFKCGKVR
ALIATDVAARGLDIAQLEQVVNYDMPYKAEDYVHRIGRTGRAGQSGLAVSFMSHDEEYLL
TAIESLLDQRLPQEWLAGFEPSPASTFTDNNPVGQRKSRSADKRKLKAKLKIHQGRGKKN
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgacagcgaaatttattgaactcggtttagaaccagcgttgagcgacactttatctgaa
ctcggtttttcaacacccacacccgtgcagcagcaagcaatcccacatgtccttgctggc
agagatgtgctagctggggctcaaaccgggacagggaaaactgccgcgtatggtttaccg
cttatccaaatgttgtcagccagccacgtgaatactgaagaagaaagaggaacgccaaga
gcgctggtggttgtgcctacccgtgaactggcgcagcaggtatttgacaatttgagtcaa
tacgccaagcacacctcgttaaaaatcgtcactgtttacggtggaaccagcatcaatgtt
caagtgaagaatttagccaatggtgtggacattttgatcgcaaccccaggtcgtttgctt
gatcacctgtttactagaaaaaccactttagttaacgcgcagctgttggtgctcgatgaa
gcggatcgcatgttagatatgggcttcttgccggatattcagcgaattttaaagcgtatg
ccagaggcgagacaaaccttgctgttttcggcaacatttgacactcgaattaaagccttg
gcttaccgcttgatgaaagagccagtagagatccaagtcgcgactgcaaacagcaccgcc
gagaaagtgcgacaggtggtttatccggtggataaaaagcgtaaaagtgaactgttggcg
tatttgatcggttcacgtaattggcagcaggtattggtgtttaccaaaactaagcagggc
agcgatcaattggtcaatgaactgaaacttgatggcattaaagcggcttcgattaatggg
gataaagcgcaaggcgcacgtcagaaagcgttggatgattttaagtgcggtaaagtgaga
gccttaattgcgacggatgttgctgcgcgcgggctggatatcgctcagcttgagcaagtg
gttaactatgacatgccttacaaagcggaagattacgtgcaccgcattggtcgtaccgga
cgcgcagggcaaagtggcttagctgtctcttttatgtctcacgatgaagagtatttgctg
actgcgatcgaaagcttacttgatcaacgtctgccgcaagagtggttagccggttttgag
ccgagcccggccagcaccttcacagataacaatccagtgggtcaacgtaaaagtcgttcg
gccgacaagcgtaaactgaaggcaaagctgaaaattcaccaaggccgtggaaagaaaaac
tga
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