Vibrio navarrensis: IF132_03940
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Entry
IF132_03940 CDS
T07785
Name
(GenBank) GGDEF and EAL domain-containing protein
KO
K20962
c-di-GMP phosphodiesterase [EC:
3.1.4.52
]
Organism
vnv
Vibrio navarrensis
Pathway
vnv05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vnv00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
IF132_03940
Enzymes [BR:
vnv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
IF132_03940
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Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAF
GAF_2
Motif
Other DBs
NCBI-ProteinID:
QOD67592
LinkDB
All DBs
Position
2:complement(919248..921161)
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AA seq
637 aa
AA seq
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MTKFKTLDYQIPEPMQHGWQRIVNLLADIVGVPAALVMRIHPQHIEVCRTSETPLNPYKL
GDSETLGHGLYCESVINSNTELMIPNALSDPLWDKNPDIKLGMISYCGLPLLWPNGETFG
TICLLDERENHFSDTYRELLRCFRSSIEAQLAVVYQHEKLLRLNKALQHRVESRTSNLAQ
LSFSLSQERDKRLAAEQDADYQRQHDHGTGFLNLSALENQLQRQLEQSNPTNIAVIHIGF
TNARTIQAKYGFALFEELLVAYRNQISIPDAMFTLTGRPASHDLVIVIQSERIGQILETL
LYQIVAVGQSTFNIDNNEVHLHAFIGVALSDAQTNSAEDLLSHANQAMIVSKESGQRYTY
FSSAHADALLYHNQIESYLLQAVRNDDLTLYFQPKVCPNTHKWIGAEALLRWSHPVLGDV
SNEALIHMAEQNGLIFEVGAFVLRVAIEKAKQWSEVVENFRVAVNISGIQLKNPLFAEQV
QDLLEAYQLPSHYLELEVTESGLISDELVAKATLSRLHELGVTLSLDDFGTGYSSFSYLK
KFPFDAIKIDKSFVQQIEHSEQDEEIIRSIIHVAKKLDLEVVMEGIETDAQEAFLIREGC
DIGQGFLYGKPMPSNEFEQGLFNQNFLGTASFAYHTS
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaattcaaaacgcttgattatcaaattcctgaaccaatgcaacacggttggcaa
cggatcgtcaatttgcttgccgatatcgttggcgtgcccgccgcgttggtgatgcgtatt
cacccacagcacattgaggtgtgccgtaccagcgagactccgttaaacccttacaaatta
ggcgattcggaaacgttaggtcacggtttgtattgcgagagtgtcatcaattcgaataca
gagctgatgattcccaacgctctgagcgacccgctatgggacaaaaatccagacataaaa
ttgggcatgatctcctattgcggtctgccgcttctgtggccaaatggcgagacgtttggc
accatctgtctgttggacgaaagagaaaatcatttcagtgacacttatcgagaattgctg
cgctgttttcgcagctccatcgaagcgcagttggccgttgtctatcaacatgaaaaactg
cttaggttgaataaagcactgcaacatcgcgtcgagagccgaaccagtaacttggctcag
ttgagcttttcactgagtcaggaaagagacaaacgtcttgccgccgagcaggatgccgat
tatcagcgacagcatgatcatggcactggctttttgaacctcagcgcactggaaaaccag
ttgcaaagacagttagaacaatccaatcccaccaacattgcggtcatccatatcggcttt
accaatgcgcgcaccattcaagccaagtatggtttcgccctgtttgaggagctcttggtc
gcgtatcgcaaccaaattagcataccagacgcgatgttcacgttaactggccgcccggcg
tctcatgatttggtcatcgtcatccaatcagagagaatcggccaaattttagaaaccttg
ctctatcagattgtcgctgtgggtcaaagcacctttaatattgacaacaatgaggtccat
ctgcacgcctttatcggtgttgcactctcagatgcgcagacaaacagcgccgaagattta
ctcagccacgccaatcaagccatgatagtcagtaaagaatccgggcagcgctacacctac
ttctcctcagcacacgccgacgcgttgttgtatcacaaccagattgaaagctacctattg
caagcagtacgtaacgacgaccttacgctctattttcagcccaaagtgtgtcccaacacc
cacaaatggattggcgcagaggctttgctgcgctggagccaccctgtgttgggggatgta
tccaacgaagcgcttatccatatggcagaacaaaatgggctgatttttgaggtcggtgct
tttgtgctgcgcgtggcaatcgaaaaagccaaacagtggtcggaagtggttgaaaatttc
cgcgtagcggtcaacatcagcggcattcagttgaaaaatccgctgtttgcggaacaagtg
caggatctgctagaagcttatcagctcccttctcactatctagaacttgaggtcacagaa
agcggtttgatctccgatgaactggtggcgaaagcgacgttgagccgcttacatgaactc
ggcgtgacattgtcactcgatgactttggcaccggatactcttccttcagctatctgaag
aaattcccgtttgatgcgatcaaaatcgacaaaagtttcgtccagcaaattgaacattca
gagcaagatgaagagatcattcgctctatcattcacgtggcgaaaaagctcgatctcgaa
gtggtgatggaaggtatcgagacggatgcgcaagaagcgtttttgatccgtgaaggctgc
gacatcggccaaggcttcttatatggcaaaccgatgccgagtaacgagtttgagcaaggc
ttgttcaaccagaatttcctcggcactgcatcttttgcttaccacacgtcatga
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