Vibrio navarrensis: IF132_08805
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Entry
IF132_08805 CDS
T07785
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
vnv
Vibrio navarrensis
Pathway
vnv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vnv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
IF132_08805 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vnv03400
]
IF132_08805 (sbcB)
Enzymes [BR:
vnv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
IF132_08805 (sbcB)
DNA repair and recombination proteins [BR:
vnv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
IF132_08805 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
IF132_08805 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
IF132_08805 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
QOD68946
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All DBs
Position
1:432833..434254
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AA seq
473 aa
AA seq
DB search
MHQDNQPTFFFFDYETWGVSPAKDRPSQFAGVRTDENFNVIGEPLVIYCRLPSDYLPAPE
AALITGITPQKAMQEGLSEPEFISKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFID
PYAWSWQNGNSRWDLLDVMRACHALRPEGITWPENDEGFTSFKLEHLSVANGIEHSNAHD
AMADVIATIEMAKKLKAAQPKLFDYFFNMRHKRKLNALIDIVNMTPLMHVSGMLGRECQY
TSWVVPLAWHPTNNNAVIVIDLAKDPQPLFELSAEQLHERLYTKREDLDDLLPVPVKLVH
LNKCPILAPAKTLTAENAANIGIDREQCLANLAQIRQHPEVREKLVQLFSIEREFADSDD
VDSKLYDGFFSPADRAAMDIIRQTEPNNLAALDITFNDKRIDPLLFRYRARNYPWTLDES
EQRRWANHCREYFESRIEEYMLNLENLVHEHESDEKKIAILKSVYRYTESLIS
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgcaccaggataatcagcctacattcttcttctttgattatgaaacttggggagtaagc
cccgctaaagaccgtccttcccagtttgcaggggtacgcaccgacgaaaatttcaatgtg
attggcgagccgctggttatctactgccgattgccaagcgactatcttcctgcgccagaa
gcggccttgattaccggcattaccccgcaaaaagcgatgcaagaggggctgtctgagccc
gaatttattagcaaaatccatgcagagctgtcaaaacccaacaccactagccttggctac
aacagcattcgttttgacgatgaagtcactcgctatacttgttatcgcaacttcattgat
ccttatgcgtggagctggcaaaacggcaactcgcgctgggatctgctggatgtgatgcgc
gcttgtcacgcccttcgcccagaaggcattacttggccggaaaatgatgagggctttacc
agcttcaaattggagcatctgtccgtcgccaacggcatagaacacagcaacgcgcacgat
gcgatggccgatgtcattgccacgattgagatggccaaaaagctcaaagcggcccagccg
aaactgtttgattactttttcaacatgcgccacaaacgtaagctgaatgcgctgattgat
atcgtcaacatgacccccttgatgcatgtatccggtatgcttggccgtgaatgtcagtac
accagttgggtggtacctttggcgtggcatccgaccaataataacgcagtgatcgtgatc
gatttggcgaaagatccacagccactgtttgagctaagcgctgagcagttacacgaacgc
ctttacaccaagcgagaagatcttgacgatctgctgccagtgccggtgaaattggtgcat
ctcaacaaatgccccattttagcgcccgcgaaaacgctgacagcagaaaatgcggcgaat
attggtattgatcgcgagcagtgtttggccaacctagcgcagatccgtcaacacccagaa
gtgcgggaaaagttggtgcaacttttttccattgaacgcgaatttgccgatagtgacgat
gtcgacagtaaattgtacgacggtttcttctcaccagccgatcgcgccgcgatggatatt
attcgtcaaaccgagccaaacaacctcgctgcgctcgacatcacctttaacgacaagcgc
attgatcctctgctgtttcgttatcgtgcgcgtaactatccgtggacattagatgagagc
gaacaacgtcgctgggccaaccattgccgagagtacttcgaaagtcgtattgaagagtac
atgctcaatttggaaaacttggtgcatgagcacgaaagcgatgaaaagaaaatagcgata
ttgaaatcggtttaccgctatactgagagcttgatctcataa
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