Vibrio navarrensis: IF132_10045
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Entry
IF132_10045 CDS
T07785
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
vnv
Vibrio navarrensis
Brite
KEGG Orthology (KO) [BR:
vnv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vnv03032
]
IF132_10045 (topA)
03400 DNA repair and recombination proteins [BR:
vnv03400
]
IF132_10045 (topA)
Enzymes [BR:
vnv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
IF132_10045 (topA)
DNA replication proteins [BR:
vnv03032
]
Prokaryotic type
DNA Topoisomerases
IF132_10045 (topA)
DNA repair and recombination proteins [BR:
vnv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
IF132_10045 (topA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
DUF7185
Motif
Other DBs
NCBI-ProteinID:
QOD69168
LinkDB
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Position
1:complement(723388..726012)
Genome browser
AA seq
874 aa
AA seq
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MGKSLVIVESPAKAKTINKYLGKDFVVKSSVGHVRDLPTAGQSTGEKAAAISTKGMSAEE
KARIKQEKDRKSLIKKMGIDPYHGWEANYQILPGKEKVVSELQKLAKDADFVYLATDLDR
EGEAIAWHLREIIGGDEARYKRVVFNEITKNAIQQAFQRPGELNMDGVNAQQARRFMDRV
VGFMVSPLLWKKVARGLSAGRVQSVAVKLLVEREREIKAFVPEEFWDLHANTMTADSTAF
KLLVAQKSGDTFRPVNEAETQAAMAVLQKAQFEVCKREDRPTKSKPSAPFITSTLQQAAS
TRLGYGVKKTMMLAQRLYEAGYITYMRTDSTNLSSEAVEAVRGYISSQFGERYLPANPLV
YGSKQGAQEAHEAIRPSDVQIKSDDLEGVDNDAHKLYSLIWNQFVACQMTEAEYDSTTVS
VKAAEYTLKAKGRILKFDGWTRVQRPLGKNEDTILPAVQVGEKLTLESLEPEQHFTKPPA
RFTEAALVKELEKRGIGRPSTYASIISTIQDRGYVKVDQRRFYAEKMGEIVTDRLDESFN
DLMNYDFTARMEEKLDQIAEGDVQWKAVLDHFFSDFTQDLEKAEQEEDEGGMKLNHIVMT
DIQCPTCSRPMGIRTASTGVFLGCSGYALPPKERCKTTINLGDEDGIINVLEEDVETAAL
RAKKRCPICETAMDAYLIDDKRKMHVCGNNPNCEGYLVEYGEFKVKGYDGPVVECDKCGS
DMVLKNGRFGKYMDCTSESCKNTRKILKNGEVAPPKEEPVHFPELPCSTSDAYFVLRDGA
SGLFMAASNFPKSRETRAPLVSELARFVERLPEKYQYLATAPTHDPDGLEAVVRFSRKSK
ENYVRTEVDGKPTGWTALYENGKWVVSDKRKKTK
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatctctcgttatagtggagtcgccagccaaggctaaaacgatcaataagtat
cttgggaaagactttgtcgtgaagtccagtgtcggtcacgtgcgtgatctaccaacggct
gggcaaagtacgggtgagaaagcggctgccatttcaactaaaggcatgagcgcagaagag
aaagctcgtattaagcaagagaaagatcgtaaatcgttgatcaaaaagatggggatagac
ccatatcacggttgggaagcgaactatcagatccttccgggcaaagaaaaagtggtgagt
gagctccaaaagctcgcgaaagacgctgactttgtctatctcgcaaccgatttggaccgc
gaaggggaagctattgcgtggcatcttcgtgagatcatcggtggtgatgaagcgcgttat
aaacgagtggtgtttaacgagattactaagaatgcgattcagcaggcgtttcagcgccct
ggtgagttgaacatggatggtgtaaatgcccagcaagctcgacgttttatggaccgagtg
gtgggctttatggtttcgccattactgtggaaaaaagtcgctcgaggcttatctgccggg
cgagttcaatcggttgcggtgaagttgctggtggagcgtgaacgcgaaatcaaagcgttc
gtccccgaagagttctgggatctgcacgcgaataccatgaccgcagattcgaccgcgttc
aaactgttggtggcgcaaaaatctggcgatactttccgtcctgtgaacgaagcggaaaca
caagcggcgatggccgttttgcaaaaagctcaatttgaagtttgcaaacgagaagatcgt
ccaacgaagagcaagccatcagcacctttcatcacctccaccttgcagcaagccgcgagc
acacgcttaggttacggggtgaagaaaaccatgatgctcgcgcagcgtttgtacgaagca
ggctatattacttacatgcgtaccgactcgaccaacctaagtagtgaagctgtagaggct
gtacgcggttatatctcttctcagtttggtgagcgttatttaccagccaatccgctggtt
tacggtagcaagcaaggggctcaagaggcgcacgaagcgatacgtccatccgatgtccaa
attaaatctgatgatttagaaggggttgataacgacgctcataaactctattcgttgatc
tggaaccaatttgtcgcctgccaaatgacagaagcggagtacgattcgacgaccgtgagt
gtcaaagcggctgaatacacgttgaaagccaaagggcgcattctaaagtttgatggttgg
acacgcgtacaaagaccgttgggtaagaatgaagacacgattttacctgctgttcaagta
ggtgaaaaactgacactcgaatcacttgagccggaacagcacttcactaagccaccagcg
cgatttaccgaagcggcgctagtgaaggaacttgagaagagaggcattggtcgtccatca
acgtatgcatcgatcatttcaacgattcaagatcgcggctatgtcaaagtggatcaacgt
cgtttctatgcagagaaaatgggtgaaattgtcactgatcgcttggatgaaagtttcaat
gatttgatgaactatgatttcaccgctcggatggaagaaaagcttgaccaaattgccgaa
ggtgatgtgcagtggaaggcggtactcgatcacttcttctctgattttactcaagatctt
gagaaagcagagcaagaagaagatgaaggtgggatgaagctgaaccatatcgtcatgacc
gatattcagtgcccgacttgttcgcgccccatggggatacgtaccgcttcaactggtgtc
tttttaggctgctcaggctatgcacttccgccaaaagagcgttgtaaaacgacgattaac
cttggtgatgaagacggcattatcaacgttcttgaagaggatgtggaaactgctgccctg
cgcgcgaagaaacgttgcccgatctgtgagacggcaatggacgcctacctaattgatgat
aagcgtaaaatgcacgtatgtggtaacaaccctaactgcgaaggctaccttgttgaatac
ggtgagttcaaagtgaaagggtatgatggcccagtggttgagtgcgataaatgtgggtct
gatatggtgctgaaaaatggccgtttcgggaaatacatggattgcaccagtgaaagttgc
aaaaatacgcgtaagatcttgaaaaatggtgaagtcgcgccaccgaaagaagagccagta
catttccctgagttaccttgtagtacttcagatgcttactttgtgctacgtgatggtgcg
tcgggtctgtttatggcggcgagcaatttccctaaatctcgagagacgagagctccattg
gtttctgagttagcgcgttttgttgagcgcttacctgagaaatatcaatacttggctacg
gcaccgacgcacgaccccgatggtttagaagcggtagtacgttttagccgtaagagcaag
gaaaactacgttcgaacggaagtagacggtaaaccgacaggatggactgcgctctacgaa
aacgggaaatgggttgtttccgataagcgtaagaaaactaaataa
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