Vibrio navarrensis: IF132_10950
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Entry
IF132_10950 CDS
T07785
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
vnv
Vibrio navarrensis
Brite
KEGG Orthology (KO) [BR:
vnv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vnv03016
]
IF132_10950 (rnd)
Enzymes [BR:
vnv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
IF132_10950 (rnd)
Transfer RNA biogenesis [BR:
vnv03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
IF132_10950 (rnd)
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
QOD69326
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All DBs
Position
1:complement(929588..930703)
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AA seq
371 aa
AA seq
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MNYQIITDEKELNRVCYQARQADVVMLDTEFVRTRTYYPQLGLIQLFDGENLSLIDPTTL
KEMDAFVELLQDTAVIKVLHACGEDLEVFHNAFGCTPVPMVDTQIMAAFLGHGLSTGFAA
LVEQYLHVQLDKSESRTDWLARPLSDKQLEYAAADVHYLLPLYDILQEQVQQAGWWQAAQ
QESELLAGKRVRTPDLANAYLDIKGAWQLKPRELAILKPLATWRMQEAIRRDLALNFVFK
EQDLLTVARLGLTSFKRMEQEGMDLRSVQRHGNKIAAIVREALTTPADEYPEEIDRLMDL
PGYKQLFKQLKDQVTLVTKNTGLAAEFLASKKQINQLISWVWKKDRAPESLPDLMQGWRL
PILGEKMNALI
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
gtgaattatcagattattaccgatgaaaaagagctgaatagggtctgctaccaagcgcga
caagcggatgtggtgatgttggataccgaatttgttcgaacgcgaacctactatcctcaa
cttggcttgattcagttgtttgacggggagaacttgtcactcatcgacccaacgacattg
aaagagatggatgctttcgttgagttgttgcaagacaccgcggtgattaaagtgctgcac
gcttgcggcgaagatttagaagtgtttcacaacgcctttggttgcacgccagttcctatg
gttgatacacaaattatggcggcctttctgggtcacggactttctaccggctttgccgct
ttggttgagcaatatttacatgtacaactggataaaagtgaatcccgcacagactggcta
gcgcgtccattgtcagacaaacagctagagtatgctgcggctgacgtgcattatttgttg
ccgctgtatgacattttgcaagagcaagtgcaacaggcaggctggtggcaagccgcacag
caagagagtgaactgctggcgggcaaacgcgtgcgcaccccagatttagcaaacgcctat
cttgatatcaaaggggcatggcagctcaaaccgcgtgaattggccatcttgaagccgctg
gcgacttggcggatgcaggaggcgattcgtcgtgatttggcgctcaactttgtctttaaa
gagcaagatttgctaacagttgcccgtttgggcctcactagctttaaacgcatggagcaa
gagggaatggatttgcgttccgtgcagcgtcatggcaataaaattgcggccattgtcaga
gaggcgctcacgacgccggcggacgagtatcctgaagagatagaccgtttgatggacttg
ccgggctataagcagctgtttaagcagctcaaagatcaagtaactctagtgacgaaaaac
accggcttggccgcagagtttttggcatcgaagaagcaaatcaaccaactgatttcttgg
gtgtggaaaaaagaccgcgctccagagagtttgccggatctgatgcaaggttggcgtttg
cccatattgggcgaaaaaatgaatgctctaatctaa
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