Vibrio navarrensis: IF132_11705
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Entry
IF132_11705 CDS
T07785
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
vnv
Vibrio navarrensis
Pathway
vnv03030
DNA replication
vnv03430
Mismatch repair
vnv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vnv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IF132_11705 (holA)
03430 Mismatch repair
IF132_11705 (holA)
03440 Homologous recombination
IF132_11705 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vnv03032
]
IF132_11705 (holA)
03400 DNA repair and recombination proteins [BR:
vnv03400
]
IF132_11705 (holA)
Enzymes [BR:
vnv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
IF132_11705 (holA)
DNA replication proteins [BR:
vnv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
IF132_11705 (holA)
DNA repair and recombination proteins [BR:
vnv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
IF132_11705 (holA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delt_C
DNA_pol3_delta
DNA_pol3_delta_C
DNA_pol3_gamma3
Zot
Motif
Other DBs
NCBI-ProteinID:
QOD69448
LinkDB
All DBs
Position
1:1072766..1073791
Genome browser
AA seq
341 aa
AA seq
DB search
MRIFAERLAEQLDKSLKSVYLIFGNEPLLIQESRLAIQKAALRQGFEERHRFAVDASLNW
NEVYDCFQALSLFSSRQIVELELPETGVNAAIASELLTLSSMLHPDTLLVVVGSKLNKAQ
ENAKWFKTLTQHGHWVSCQTPDMARLPQFVQSRCRQLGLKPDQQAVQMLAQWHEGNLFAL
VQSLEKLALLYPDGVLNLVRLEESLSRHNHFTPFHWIDALLEGKANRCQKILRQLAAEGV
ESVILLRSLQKELMLLLKMQALSAQLPLNAIFEQHKVWPNKRPLYHAALTRLTYQRLQRL
LQLLTQVELLAKTQYEQSEWPLLHQLSLEMCLPDAELACKA
NT seq
1026 nt
NT seq
+upstream
nt +downstream
nt
atgagaatttttgcagaacggctggcagaacagctcgataaatcccttaaatctgtttac
ctgatctttggtaacgaacctttgcttatccaagaaagccgcttggcaattcaaaaagcg
gctttgcgccaaggctttgaggagcgacatcgttttgccgtcgatgccagcctcaactgg
aacgaggtgtacgactgtttccaagctttgagcctgttttccagtcgccaaattgtcgaa
ctggaattaccggaaaccggagtgaatgcggcgattgccagcgagttactcacactctcc
tcaatgctgcatcctgacaccttgttggtggtagttggtagcaaactaaacaaagcgcaa
gaaaacgccaaatggtttaaaacgctcacgcagcatggccattgggtcagttgccaaact
ccagacatggcacgtttgccacaatttgtgcaaagccgctgccgccaactcggactcaaa
cccgatcagcaagcggtacaaatgctggcacaatggcacgaagggaacttatttgcctta
gtgcaaagcttagaaaagctagctctgctctaccctgacggcgtgctgaacttggttcgc
ctagaagagtctcttagtcgtcacaaccatttcaccccctttcactggatagacgcacta
ctcgaaggcaaagccaatcgctgccagaaaatcctgcgtcaactcgccgccgaaggggta
gaaagcgtcatcttgttgcgctcactacaaaaggaactgatgctactgctcaaaatgcag
gctttgtcggctcaattgccgctcaacgctatttttgagcaacataaagtgtggccaaac
aaaaggccactctaccatgcagcgctaactcgattgacttaccaacgccttcaacgcctg
ttgcagttactgactcaggtagagctgctggccaaaacccaatatgaacaatcggagtgg
ccacttcttcatcaattaagcttggagatgtgcctgcctgacgcagagttggcttgtaaa
gcgtaa
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