Vibrio navarrensis: IF132_12695
Help
Entry
IF132_12695 CDS
T07785
Symbol
srmB
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
vnv
Vibrio navarrensis
Brite
KEGG Orthology (KO) [BR:
vnv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vnv03009
]
IF132_12695 (srmB)
Enzymes [BR:
vnv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IF132_12695 (srmB)
Ribosome biogenesis [BR:
vnv03009
]
Prokaryotic type
rRNA helicases
IF132_12695 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_C_2
AtuA_ferredoxin
AAA_11
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QOD69627
LinkDB
All DBs
Position
1:1289845..1291071
Genome browser
AA seq
408 aa
AA seq
DB search
MIRTFAELDLDPNLLAAIDELGFERPTQIQAEAIPQALDGRDILACAPTGTGKTAAFVLP
ALQYLIDFPRRKPGPARILILTPTRELAMQVADQARALAKYTKLNIFTITGGVQYQEHAD
ILSTTQDIVVATPGRLMEYIQAERFDCRAIEWLILDEADRMLDMGFAPTVDRLSNECRWR
KQSMLFSATLEGKGVEGFTADLLKDPADIDAEPSRRERKKITQWYYRADSMDHKLALLKN
ILTEQAERTIVFLKTRERLADLRAQLESAQIPCSWIQGEMPQDRRNNAIARFRDGSVNVL
LATDVAARGIDLPDVSHVVNFDMPRSADVYLHRIGRTARAGKKGNAISIVEAHDQPMLDR
VARYVKEEIKERFVKELRPQHKKPVFKKKKKKDDKKAVSKKKSVKKKK
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
gtgatcagaacttttgctgaactggatcttgaccccaacctgttggctgccattgatgaa
cttggctttgagcgtccaacgcaaattcaggccgaagcgatcccacaagctctggacggc
cgagacattttggcctgcgcgcccaccggcaccggaaaaacggcggccttcgtactgcca
gcactgcaatatctgattgacttcccgcgtcgcaaaccggggcctgcccgtattttgatt
ttaacgccaacacgtgaactggcgatgcaggtcgctgaccaagcgcgcgcactggcgaag
tacaccaaactcaatatctttaccatcacaggtggcgtgcagtatcaagagcatgccgat
atcctctccacaacgcaggatatcgtcgtcgccacacctggccgcttgatggagtacatt
caagccgagcgtttcgactgccgtgcgattgagtggctgatccttgatgaagcggatcgc
atgctggatatgggctttgccccgaccgtggaccgcctatcgaacgaatgtcgctggcgt
aaacagagcatgctcttttctgccaccttggaaggtaagggcgtggaaggcttcaccgca
gatctactcaaagatcccgccgacattgatgccgagccctctcgtcgcgagcgcaagaag
attacccagtggtactaccgcgccgacagcatggaccacaaactggcgctgctgaaaaac
attcttaccgagcaagcggaacgcactattgtcttcttgaaaacacgcgagcgtttggcc
gacctgcgagcacagctggaaagcgctcagatcccgtgttcttggatccaaggggagatg
ccacaagatcgccgtaacaatgcgattgcgcgttttcgcgatggcagtgttaacgtgcta
cttgcaaccgatgtagcggcacgcggcatcgatttacctgacgtttctcacgtggtgaac
tttgacatgccacgcagcgccgatgtgtatctgcaccgaattggccgtactgcgcgtgct
ggtaaaaaaggcaacgctatctccatcgttgaagcgcatgaccaaccgatgcttgaccgc
gtcgctcgctacgtcaaagaagagatcaaagagcgctttgtcaaagagctgcgtccacaa
cacaaaaaaccggtgtttaagaagaaaaagaaaaaagacgataaaaaagccgtcagcaaa
aagaaaagtgtgaaaaagaaaaagtaa
DBGET
integrated database retrieval system
