Vibrio navarrensis: IF132_15765
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Entry
IF132_15765 CDS
T07785
Symbol
lysA
Name
(GenBank) diaminopimelate decarboxylase
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
vnv
Vibrio navarrensis
Pathway
vnv00300
Lysine biosynthesis
vnv00470
D-Amino acid metabolism
vnv01100
Metabolic pathways
vnv01110
Biosynthesis of secondary metabolites
vnv01120
Microbial metabolism in diverse environments
vnv01230
Biosynthesis of amino acids
Module
vnv_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
vnv00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
IF132_15765 (lysA)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
IF132_15765 (lysA)
Enzymes [BR:
vnv01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
IF132_15765 (lysA)
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GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Motif
Other DBs
NCBI-ProteinID:
QOD70164
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Position
1:1984510..1985763
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AA seq
417 aa
AA seq
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MDYFNYQDDGQLWAEGVALSQLAQQYGTPLYVYSRATLERHWKAFDQSVENHPHLVCYAV
KANSNLGVLNVLARLGSGFDIVSGGELERVIAAGGDPRKVVFSGVGKTEAEMRRALELNI
KCFNVESEPELERLNKVAGELGVKAPISLRINPDVDAQTHPYISTGLRDNKFGIAFDRAP
AVYQFAQSLENLNVQGIDCHIGSQLTALAPFIDATDRLLALIDSLKEQGITIRHLDVGGG
LGVVYRNELPPQPSEYAKALLGRLENHQDLELIFEPGRAIAANAGVLLTKVEFLKHTEHK
NFAIIDAAMNDLMRPALYQAWQDIVPVKPRSGEAVTYDLVGPICETGDFLGKDRSLVLAE
NDLLAVRSAGAYGFVMSSNYNTRARAAEIMVDGTQSFLVRQREELRSLWELEHILPE
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
ttggactatttcaattatcaggatgatggccaactgtgggccgaaggcgttgcgctgtct
caactggcgcagcaatatggtacgccgctgtacgtctattcacgtgctacattagagcgc
cactggaaagcctttgatcagtctgttgaaaaccatcctcatctggtttgctacgcggta
aaagccaactccaatcttggtgtgctcaatgtgttggcgcgtcttggttccggctttgat
atcgtctctggcggtgagctggagcgtgtgattgccgcgggtggcgatccacgtaaagtg
gtgttttctggtgtgggtaaaaccgaagctgagatgcgtcgcgcgctggaactgaacatc
aaatgtttcaatgtggagtccgagcctgagctggagcgcctcaacaaggtagccggtgag
ctgggcgtgaaagcaccaatttcactgcgcattaatcctgatgttgatgctcaaacccat
ccttatatttcgactggcctacgtgacaacaaatttggtattgcgtttgaccgcgcaccg
gcggtttatcagtttgcgcaaagcctagagaacctcaatgtgcaggggattgattgccac
attggctctcagttgacggcactcgcgccgttcattgatgccacggatcgtcttttggcg
ctgatcgattcccttaaagagcaaggcatcaccatccgtcatctggatgtcggtggtggt
ttaggggtcgtttatcgtaatgagctgccaccgcagccgtcagagtatgcgaaagcgctg
ctgggccgtctggaaaaccatcaagatctcgagctgattttcgagcctggtcgagccatt
gcggcgaatgcgggtgtactgctgaccaaagtggaatttctcaaacataccgagcacaaa
aacttcgccatcattgatgctgcgatgaacgacttgatgcgcccggcgctttaccaagcg
tggcaggatatcgtgccggtgaagccacgcagcggcgaagcggtgacgtatgatctggtc
gggccgatttgtgaaaccggtgatttcctcggtaaagaccgctcactggtgctggccgaa
aatgacctgcttgcggtgcgcagcgccggtgcttacggctttgtgatgtcctcgaactac
aatactcgtgctcgcgccgcagaaatcatggtcgatggcacgcaaagtttcctcgttcgt
cagcgtgaagagctgcgtagcctgtgggaacttgaacacattcttccggagtaa
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