Vibrio navarrensis: IF132_17620
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Entry
IF132_17620 CDS
T07785
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
vnv
Vibrio navarrensis
Brite
KEGG Orthology (KO) [BR:
vnv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vnv03021
]
IF132_17620 (rapA)
Transcription machinery [BR:
vnv03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
IF132_17620 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
Helicase_C_2
WWE
AAA_34
Flavi_DEAD
DUF4168
Motif
Other DBs
NCBI-ProteinID:
QOD70472
LinkDB
All DBs
Position
1:2357276..2360185
Genome browser
AA seq
969 aa
AA seq
DB search
MTFALGQRWISDTESDLGLGTVVALDARTVTLMFAASEENRVYASNDAPVTRVIFNVGDV
VECQEGWSLRVEQVVEEKGLYTYLGTREDTEETGVALREIFLSNQIRFNKPQDKMYAGQI
DRMDNFVLRYRALKNQYEQHRSPMRGLCGMRAGLIPHQLYIAHEVGRRHAPRVLLADEVG
LGKTIEAGMIIHQQVLLGRAERILIVVPETLQHQWLVEMMRRFNLHFSIFDEERCVEAFA
ESDNPFDTQQYVLCSLDFLRKSRKRFEQALEADWDLLVVDEAHHLEWSQDKPSRGYQVIE
GLAERTPGVLLLTATPEQLGRESHFARLRLLDSDRFYDYEAFVEEEAQYAPVADAITALF
SGKLLPDEAKNQITELLSEQDVEPLFRIIESNADEESKAAARQELIDNLMDRHGTGRVLF
RNTRAAIKGFPVRNVHLLPMPIPSQYTTSMRVSGMIGGKMTPEARAMKNLYPEEIFQEFE
GDDSSWWQFDSRVNWLLEKILAKRSEKILVIASRSSTALQLEQALREREGIRATVFHEGM
SILERDKAAAYFAQEEGGAQVLICSEIGSEGRNFQFANQLVMFDLPFNPDLLEQRIGRLD
RIGQKRDIDIHVPYLQGTAQEVLARWFDEGLNAFAETCPTGRAVYDQYADTLIEILASGD
STPLEEVIAQSAKMNLELKAQLEQGRDRLLEMHSNGGEKAQQIVAEIAGKDGDTNLVSFA
LSLFDTIGLNQDDKGENAIVVTPSEHMMVPSYPGLPYEGATITFDRDTALSREDMHFISW
EHPMIQGGIDLLMSEGVGTCAVSLLKNKALPVGTILLELIYAVDAQAPKRSGIGRFLPRT
PIRLMMDARGNDLSAQVEFEGFNRQLSPVNRHLASKLVSSVQQDIHRLIESGDALVVERV
EAIRQQAQQEMQQSLNGELERLQALKAVNPNIRDEELEAIDAQIKELSGYIGKAQYQLDS
LRLIVVSHN
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgctctggggcaacgctggatcagcgatacggaaagtgatttgggtttaggt
acggtggtcgcgttagacgcgcgaacggtgacattaatgttcgccgcttcagaggaaaac
cgtgtttatgccagtaacgatgccccagtaacccgagtgatttttaacgtcggtgatgtc
gtggagtgtcaagaaggctggtcactgcgtgtagaacaagtggtggaggagaaaggcctt
tacacttacctcggcacgcgcgaagacaccgaagagaccggagtcgcgctgcgtgaaatt
ttccttagtaaccaaatccgtttcaacaagccgcaagacaaaatgtacgctggtcaaatc
gaccgcatggacaacttcgtgctgcgttaccgcgcattgaaaaatcagtatgagcagcat
cgcagcccaatgcgcggcctctgtggcatgcgcgctggccttattcctcaccaactttac
attgcccacgaagtggggcgtcgtcatgcgccgcgcgtattactggcagatgaagtgggc
ctaggtaaaaccatcgaagcggggatgatcattcatcaacaagtgctgcttggtcgtgct
gagcgcattttgattgtggtgccagaaactttgcagcaccagtggctggtggaaatgatg
cgtcgtttcaacctgcatttctcgatttttgacgaagagcgctgcgtcgaagcattcgcc
gaatcggacaacccatttgacacccagcagtacgtgctctgttcactggattttttgcgc
aaaagtcgcaagcgttttgagcaagcgctggaagcggattgggatctgttggtggtcgat
gaagcgcaccatctggaatggagccaagacaaaccaagccgcggctaccaagtgattgaa
gggctggctgagcgcacgccgggcgtattgctgctgaccgcgacgcccgagcaacttggc
cgcgagagccactttgcccgtctgcgcctacttgattcagatcgtttctacgactacgaa
gcgtttgtcgaagaagaagcgcagtacgcgccagttgccgatgcgatcactgccctgttt
tcgggcaagctgctgcctgatgaggcaaaaaatcagatcactgaactgctttcggagcag
gacgttgaaccgctgtttcgtattatcgaaagcaacgccgatgaagagagcaaagccgct
gcgcgccaagagctgattgacaacctgatggatcgccacggtacggggcgtgttctattc
cgtaacacccgtgcggccatcaaaggcttcccagtacgtaacgtgcacctgctgccgatg
ccgatcccatcgcaatacactacttcaatgcgtgtctctggcatgattggcggtaaaatg
acgccggaagcgcgtgcgatgaaaaacctttatccggaagagatcttccaagagtttgaa
ggggacgattcaagctggtggcaatttgactcacgggtaaactggctgctggaaaaaatt
ctcgccaaacgcagcgagaaaattttggttatcgcctcacgctccagcacggcattgcaa
ctagagcaagcgctgcgcgagcgtgaaggcattcgcgccaccgtcttccacgaaggcatg
tcgattctcgagcgcgataaagcggcggcgtactttgctcaggaagagggcggcgctcag
gtgctgatctgtagtgagatcggctcagaaggccgtaacttccagttcgctaaccagctg
gtgatgtttgatttgccgtttaacccggatctgcttgagcagcggattggccgtttggat
cgcatcggacaaaaacgtgatatcgacattcatgtcccttacctgcaaggcactgcgcaa
gaggtgctcgcacgttggttcgatgaaggcttgaacgcatttgctgaaacctgcccaaca
ggccgtgcggtgtatgaccaatacgccgatacgctgattgagatcctcgcatccggtgac
agtacgccgctggaagaggtgattgcccaatcggctaaaatgaacctcgagctaaaagcg
cagttggaacaagggcgcgatcgcctgttggaaatgcactctaacggcggcgaaaaagcg
cagcagatcgtggcagagatcgcgggcaaagatggcgataccaacttggtgagctttgcg
ctgagcctgtttgataccattggccttaaccaagacgataaaggcgaaaacgcgattgtc
gttacgccatccgagcacatgatggtgccaagctacccgggcttaccctacgaaggagcg
accatcacgtttgaccgcgatacggcactgtcgcgtgaagacatgcactttatcagttgg
gaacacccgatgattcagggcggtatcgacctgttgatgagcgaaggcgtcggcacatgt
gcggtgtcgctgctgaagaacaaagcgttgccggttggcacaattttgctcgagctgatc
tacgctgtggatgcccaagcgcctaaacgcagcggtattggccgcttcctaccgcgcacg
cccatccgtttgatgatggatgcgcgcggcaatgatttgtcggctcaggttgagtttgaa
ggctttaaccgtcaacttagcccggttaaccgccatctggccagcaaactggtttcatcg
gtgcagcaagatattcaccgtttgatcgagtccggtgatgcgctggtggttgagcgcgtc
gaagcgattcgccagcaagcacagcaagagatgcagcaaagcctcaatggtgagctggaa
cgtctgcaagcgctgaaagcggtcaacccgaatattcgtgatgaagagctggaagcgatt
gacgcgcaaatcaaagagctgagtggttacattggcaaagcgcagtaccagcttgattca
ctgcgtctgattgtggtcagccacaactaa
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