Vibrio navarrensis: IF132_20435
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Entry
IF132_20435 CDS
T07785
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
vnv
Vibrio navarrensis
Pathway
vnv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vnv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IF132_20435 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vnv03019
]
IF132_20435 (rne)
03009 Ribosome biogenesis [BR:
vnv03009
]
IF132_20435 (rne)
Enzymes [BR:
vnv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
IF132_20435 (rne)
Messenger RNA biogenesis [BR:
vnv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
IF132_20435 (rne)
Ribosome biogenesis [BR:
vnv03009
]
Prokaryotic type
rRNA processing factors
IF132_20435 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
C12orf66_like
DUF4677
PNPase_C
Motif
Other DBs
NCBI-ProteinID:
QOD70972
LinkDB
All DBs
Position
1:complement(2959072..2962236)
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AA seq
1054 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLYDLDIESPGHESKKANIYKGRITRVEPSLEAAFVDY
GAERHGFLPLKEIAKEYFPDGYTYQGRPSIKEVLKEGQEVIVQIEKEERGSKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDERTDLKTALSTLELPQGMGLIVRTAGVGKSAEEL
EWDLNVLLNHWAAIKDASESNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIFERA
KEHIQLVRPDFISRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALTS
IDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVEN
RLREAVRLDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNESLAL
SVLRLIEEEALKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERIQEVKITVVPNSDMETP
HFEVIRVREGEEVDLLSYLLPKKLEAMKEAEGKESSETEFKSKRIEEPVLKGFASPAQSA
PAPKPAPQVKEVEAQPQPQQPGLFSRFFSALGNFLFGSAQDKAETEKQQTQSEGEKDDKR
QKRERHDRNDRRLNSREPRDNREPRDNKRRRKPRDESATVESTQDENAKPRQQQKRKPKA
APVKAEAPVENKANPKVAEKGLQLASEAQGAQKLDSVKANVKAEKVKERRQRRKLNKSVR
VKDQVQDETVEENVLAATPALEQNESFVATPVEAALQTAATIDTDNVDEQDEDKEAKPRR
NRRSPRHLRASGQRRRRGRDRRPNPFRLRKGGVASPEMAMGKVMPRYIPKPVAKKEQVAK
EPVTETVVKSAVVLQGGVACPELAMGKVIVRRDNHEQQKADSVQHNQAAVEVIEQVATPV
DAQEAVIVAEESFVAAKEPTSQADVEAVNESAQETAEQVSVAVEETVDETNAEVTTLETT
SSQVESKEESAENLVKVEAPVEATQPKLEKQAVSALSKPHAFAPMTKAPGPQELREITVV
AAAFRSERYVQRGAGSQVATSQASAEMAKPQSTS
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgattaacgcaactcaaaaagaagagttgcgtgtcgctttggttgat
ggccagcgactttacgatttggatatcgagagtcctgggcatgaatcgaagaaagcaaat
atctataaagggcgtatcacacgcgttgaaccaagcttagaagccgcattcgtcgattac
ggtgctgagcgacacggtttcctccctctcaaagaaatcgccaaagaatacttccctgat
ggttacacctaccaaggccgtccgagcattaaagaagtgctaaaagaaggtcaggaagtg
atcgtacagatcgagaaagaagagcgtggtagtaaaggcgcggctttaaccacgttcatc
tctttggcgggcagctacttagtgctgatgccaaataaccctcgagcaggtggtatttct
cgccgtatcgaaggtgacgagagaaccgatctcaaaacggccttaagcacactcgaacta
ccacaaggtatgggcttgattgtccgcaccgcaggggtaggcaaaagtgcagaagaactc
gagtgggatttaaatgtactgctcaatcactgggcggcaatcaaagacgcttctgaatca
aatccagcaccgtttttgatccaccaagagagtaacgtcattgttcgtgctatccgcgat
tatttacgtcgcgacattggtgagatcttaatcgacagcaacaccatttttgaacgtgcc
aaagagcacattcaactggttcgcccagactttatcagccgtgtgaagaagtacgatggt
gaagtgccgcttttcagtcactatcaaattgaaagccagatcgagtccgcattccaacgt
gaagtgcgcctaccttctggtggttctattgttattgatccaacagaagcactgacttca
attgatatcaactctgcccgtgcaactaaaggcggcgacattgaagaaaccgctctaaac
accaacttagaagcagccgacgaaatcgctcgccagttgcgtctgcgtgacttaggtggt
ctggtggtgatcgatttcattgatatgacaccagtgcgccaccaacgcgaagtggaaaac
cgtttgcgagaagcggtacgtctcgatcgtgcacgcgtacaaattggccgcatttcacgc
tttggtctgctggaaatgtcgcgtcagcgcttgagcccttctttagcagaagcaagccat
catatttgtcctcgttgtagcggcacaggtgtggttcgcgataacgaatctctagcgctt
tctgttttgcgtttaattgaagaagaagcactgaaagacaataccgcccaagtattggct
gtggtacctgtaccgattgcttcttatctgttgaacgaaaaacgtcgctcagtgaaccac
attgaacgcattcaagaagtgaagatcactgtggtgccaaactccgacatggaaacaccg
cactttgaagtgatccgtgtacgcgaaggcgaagaggtggatctgctttcttacttgcta
ccgaagaaactggaagcaatgaaagaagcggaaggaaaagagagttcagaaacagaattc
aagtcgaaacgcattgaagaacctgttttgaaaggtttcgcttctccggcgcaatcggcg
cctgcaccaaaaccagcaccacaagtgaaagaagtagaagctcaacctcagccacagcag
ccaggcttgtttagccgcttctttagtgcgctgggtaacttcctgtttggctctgcacaa
gacaaagctgagacagagaaacagcagacgcaaagcgaaggcgaaaaagacgacaaacgt
cagaaacgtgaacgtcacgatcgtaatgatcgccgtcttaacagtcgtgagcctcgtgac
aaccgtgaacctcgtgacaacaaacgtcgccgtaagccacgtgacgagagtgctaccgta
gagtccacgcaagatgaaaacgcgaaaccgcgccaacaacaaaagcgtaagccgaaagcg
gctccggtgaaagcagaagcacctgtagaaaacaaagcgaaccctaaagtcgcggaaaaa
ggtttacagctcgcttcagaagcacaaggggcacagaagctggattctgttaaagctaat
gtgaaggcagagaaagttaaagagcgtcgtcagcgtcgtaaactgaacaaatctgtacgc
gtgaaagatcaggttcaagacgaaacggtagaagaaaacgtattggctgcgacgcctgcg
ctagagcaaaacgaaagtttcgttgctacgccagttgaagcagcgcttcaaaccgccgca
accattgatacagacaatgtcgatgagcaagacgaagataaagaggcgaaaccacgccgc
aatcgtcgttcgccacgtcatcttcgtgccagcgggcaacgccgtcgtcgtggtcgtgac
cgccgtccaaatcctttccgcctacgtaaaggtggtgttgcgtcaccagaaatggcaatg
ggtaaggtaatgccgcgctacattccaaaaccagttgcgaagaaagagcaagtcgcgaaa
gagcctgtgacagaaaccgttgtcaaatcagcagtggttttacaaggtggtgttgcttgc
ccagaactcgccatgggtaaagttattgttcgacgtgacaaccatgaacagcagaaagca
gactctgttcagcacaaccaagcggctgttgaagttattgagcaagtggcaacgcctgtc
gatgcacaagaagctgtcattgtggcagaagaatctttcgttgcagcaaaggaacctaca
tcacaagcagacgtggaagctgtgaacgaatcagctcaagaaacggctgaacaggtttcg
gttgccgttgaagaaacggttgatgaaactaatgctgaagtgacgactctggaaacgact
tcttctcaggtagaaagcaaagaggaatcggcagagaatctggtcaaagtcgaagcaccg
gtagaggcaactcagcccaagctggaaaagcaagcggtgagtgcgctatctaagccacat
gcctttgcgccgatgaccaaagcgcctggtccacaggagttgcgtgagattaccgtcgtc
gcagccgcgttccgctctgagcgttacgttcaacgcggtgccggtagtcaggtggcaacc
agccaagcttctgctgaaatggcaaagccgcaatcgacaagctaa
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