Vairimorpha necatrix: VNE69_04128
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Entry
VNE69_04128 CDS
T10154
Name
(RefSeq) ATP-dependent RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
vnx Vairimorpha necatrix
Pathway
vnx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vnx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VNE69_04128
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vnx03019
]
VNE69_04128
03041 Spliceosome [BR:
vnx03041
]
VNE69_04128
03009 Ribosome biogenesis [BR:
vnx03009
]
VNE69_04128
03016 Transfer RNA biogenesis [BR:
vnx03016
]
VNE69_04128
Enzymes [BR:
vnx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
VNE69_04128
Messenger RNA biogenesis [BR:
vnx03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
VNE69_04128
Spliceosome [BR:
vnx03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
VNE69_04128
Complex C
U4/U6.U5 tri-SnRNP related factors
VNE69_04128
Ribosome biogenesis [BR:
vnx03009
]
Eukaryotic type
Pre-60S particles
Helicases
VNE69_04128
Transfer RNA biogenesis [BR:
vnx03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
VNE69_04128
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
DEXQc_Suv3
ResIII
Helicase_C
AAA_22
AAA_16
Motif
Other DBs
NCBI-GeneID:
90541118
NCBI-ProteinID:
XP_065329447
UniProt:
A0AAX4JBP0
LinkDB
All DBs
Position
4:complement(578781..581597)
Genome browser
AA seq
938 aa
AA seq
DB search
MKANLLDAFTDKTVLHDITEPIKQELRTNTHDAFERNGTKHEAAVPIDLDYTPIPEEFQK
FTAKSYDFELDTFQKISLCALERDESVLVSAHTSSGKTVVAEYAIAMSLRDNQRVVYTSP
IKALSNQKYRELLEEFTDVGLMTGDVTINPDASCLVMTTEILRNMLYRGSEVTREIHWII
FDEIHYMRDRERGVVWEETIILLPSHVRMVFLSATIPNALEFAEWISYIQKQIVHVVYTE
KRITPLVHYFKTDKLHLIKDQDFHKNEFYQAMKTVKKGRITDRSIISVLKELSLPAVIFS
FRRKDCEYFATRLVDDYLDEKGKEVVKTVFYNAIGSLRQEDRELPIIQNILPLLLKGIGI
HHSGLLPIIKEIVEILFQEGYLKVLFATETFSIGLNMPAKSVVFTSLKKFDGVKTRQITS
AEYIQMSGRAGRRGIDKMGIVVSLLNDTMTFNELKDLFSCSKDNLISAFRLTYNMILNLM
RVEGLDPLYLISRSFHHFQAFKKGKDKEDELFEMYSLIKDYPKNNLVDLLLELENEKILR
CKKFSSFFYPYIKTGRVVDLFIPRQGAGIFIKNAFVEAYDDEEIVCLVFTKNFIKKITTN
INHVYMVYDFRAKFNPKVFYKNFEKINFQDDLEKINEIKEKIIQEYSCIEELVRNIKLDL
CILCNKSYMECLLDCSNEIIKSEEYKVDVDCLTIFDTKFKNYIETKVDNTNNIKDTINFI
KNEIYKSLYHEKFKEMSKLKEIYHMEECKKMIFVLKDLEYCDDTNVEIKGRLACEISTGD
ELVLTEMIFNGDFLKLEVDEFVPLLSCMVFEEWNEEDFVLSDENKKLYSFIEDSVRKVCH
VLKKHGIEGNPKKYLRKFSYEMMEIVRMWCKGHTFLEICSSTEIFEGSIIRTFKRLEELL
KQLSNAGRVIGNTELENMFSNGIVKIKRDIVFSNSLYL
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctaatctattagacgcatttacagataaaactgtacttcacgatattacagaa
ccaataaaacaagaacttcgaactaacactcatgacgcttttgaaagaaatggtactaaa
cacgaggccgcagtgccaattgatttagattacacaccaatcccagaagaattccagaaa
ttcactgccaaatcttatgattttgaacttgacacatttcaaaaaatttctttgtgcgct
cttgagcgagacgagagtgtcctggtaagtgcgcacactagttcgggcaagacagtagtc
gccgaatatgccatagcaatgtctttacgtgacaatcagagagttgtgtacacttcgccc
attaaagcgcttagtaatcagaaatatagagaattacttgaagaatttactgatgtgggt
cttatgactggagatgttacaattaatcctgatgcttcttgtctagttatgactactgag
atcttacggaatatgctttacagaggcagtgaagttactagagaaatacattggataatt
tttgatgaaatacattacatgagagacagagaacgaggtgtagtctgggaagagactatc
attttattaccatctcatgtccgtatggtttttttaagtgccactataccaaatgcttta
gaatttgctgaatggatttcatacattcagaaacaaattgtgcacgtggtttacacagaa
aagcgaattacgccacttgttcattattttaaaactgacaaattgcatttaattaaagat
caagattttcataaaaatgaattttaccaggctatgaaaacagttaagaaaggcagaata
acagatcgaagtattattagtgttcttaaagagttatcgcttcctgccgtcatattttca
tttagaagaaaagattgcgaatattttgcgacgaggttagtcgacgattatctcgacgaa
aaagggaaagaagtagtcaagacagtcttttataacgcgatagggtctttgagacaagaa
gacagagaactgcctattattcagaatattctgcctttattattaaaaggaataggaata
catcattctggtctactaccaattataaaagaaatagtagaaattttattccaagaaggt
tatctgaaagttttatttgctactgaaactttttccattggtctaaacatgcctgctaaa
tctgtcgtctttacgtctctaaaaaaatttgatggtgtcaagactcgacaaattacaagt
gccgaatacatccaaatgagtggtagagctggtagacgaggtatagacaaaatgggtata
gtcgtaagtttattaaatgacactatgacttttaatgaactaaaagatcttttctcgtgt
tcaaaagacaatttaattagtgctttccgtttgacttacaatatgattcttaatctaatg
cgtgtagaaggtcttgatcctttgtatttgataagtcgatctttccaccatttccaagcc
tttaaaaaaggtaaagacaaagaagacgagttatttgaaatgtacagtcttataaaagat
tatcctaagaataatttagtagatttattattagaattagaaaatgaaaaaattttaaga
tgtaaaaaattttcatcatttttttacccgtatataaaaacaggtagagttgttgattta
tttatacctcgtcaaggagcgggtatttttataaaaaatgcttttgtagaagcttatgat
gatgaagaaattgtttgtttagtttttactaaaaattttataaagaaaattactacgaat
ataaatcatgtttatatggtttatgatttccgggcgaaatttaatcccaaagttttttat
aaaaattttgaaaaaattaattttcaagatgatttagaaaagattaatgaaattaaagag
aagataatacaagaatattcatgtatagaagaattagtaaggaatatcaaattagatttg
tgtattctgtgtaataaatcgtatatggaatgtttattagattgtagtaatgagataata
aaaagtgaagagtataaagttgatgttgattgtcttacaatttttgatactaaatttaag
aattatatcgagactaaggtagataatactaataatattaaagatacaattaattttata
aaaaatgaaatttataaaagtctctaccatgagaaatttaaagaaatgtccaaattaaaa
gagatttatcatatggaagaatgtaaaaagatgatttttgtactaaaagatctcgaatat
tgcgatgacacaaatgtggagatcaaaggcagactggcttgcgaaatatccacaggcgac
gaattagtcctcacagagatgatttttaatggggatttcttgaaattagaagtagacgaa
ttcgtcccgcttttgtcttgcatggtcttcgaagagtggaacgaagaagatttcgtctta
tctgacgagaataaaaagctttactcgtttattgaagattcagtccggaaagtgtgccat
gtcttaaaaaagcacgggatagaaggaaatcctaagaaatatttaaggaagttttcttat
gagatgatggaaatagtaagaatgtggtgtaaaggacacacatttttagagatttgtagt
agtacggagatatttgaaggaagtattattagaacatttaagagacttgaggaattatta
aagcagcttagtaatgcggggagagttatagggaatactgagttggagaatatgtttagt
aatgggatagtgaagattaagagagatattgtattttctaattctttatatttataa
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